Transcript: ENST00000667243.1 LINC00840-219

Description

long intergenic non-protein coding RNA 840 [Source:HGNC Symbol;Acc:HGNC:44987]

Location

Chromosome 10: 43,845,261-43,850,558 forward strand.

About this transcript

This transcript has 2 exons and maps to 155 oligo probes.

Gene

This transcript is a product of gene ENSG00000226808.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000659335.1	LINC00840-212	1895	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000826507.1	LINC00840-240	2581	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000649239.1	LINC00840-203	2203	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658791.2	LINC00840-210	2144	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000431737.1	LINC00840-202	1974	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000826508.1	LINC00840-241	1919	No protein	-	lncRNA	-	-
ENST00000665279.1	LINC00840-216	1797	No protein	-	lncRNA	-	-
ENST00000657471.2	LINC00840-209	1723	No protein	-	lncRNA	-	-
ENST00000826502.1	LINC00840-235	1701	No protein	-	lncRNA	-	-
ENST00000653073.2	LINC00840-206	1667	No protein	-	lncRNA	-	-
ENST00000826500.1	LINC00840-233	1629	No protein	-	lncRNA	-	-
ENST00000657037.2	LINC00840-208	1615	No protein	-	lncRNA	-	-
ENST00000654492.1	LINC00840-207	1605	No protein	-	lncRNA	-	-
ENST00000826492.1	LINC00840-225	1543	No protein	-	lncRNA	-	-
ENST00000826501.1	LINC00840-234	1540	No protein	-	lncRNA	-	-
ENST00000669972.1	LINC00840-220	1514	No protein	-	lncRNA	-	-
ENST00000659064.1	LINC00840-211	1507	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000826511.1	LINC00840-244	1393	No protein	-	lncRNA	-	-
ENST00000826493.1	LINC00840-226	1376	No protein	-	lncRNA	-	-
ENST00000826488.1	LINC00840-221	1371	No protein	-	lncRNA	-	-
ENST00000826491.1	LINC00840-224	1334	No protein	-	lncRNA	-	-
ENST00000661424.1	LINC00840-214	1297	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000660203.2	LINC00840-213	1289	No protein	-	lncRNA	-	-
ENST00000666323.1	LINC00840-217	1283	No protein	-	lncRNA	-	-
ENST00000374432.4	LINC00840-201	1254	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000826505.1	LINC00840-238	1244	No protein	-	lncRNA	-	-
ENST00000667243.1	LINC00840-219	1227	No protein	-	lncRNA	-	-
ENST00000652937.1	LINC00840-205	1191	No protein	-	lncRNA	-	-
ENST00000826498.1	LINC00840-231	1185	No protein	-	lncRNA	-	-
ENST00000649942.1	LINC00840-204	1141	No protein	-	lncRNA	-	-
ENST00000826499.1	LINC00840-232	1137	No protein	-	lncRNA	-	-
ENST00000826489.1	LINC00840-222	1117	No protein	-	lncRNA	-	-
ENST00000826512.1	LINC00840-245	1085	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000826504.1	LINC00840-237	1056	No protein	-	lncRNA	-	-
ENST00000826514.1	LINC00840-247	1008	No protein	-	lncRNA	-	-
ENST00000826506.1	LINC00840-239	886	No protein	-	lncRNA	-	-
ENST00000826497.1	LINC00840-230	870	No protein	-	lncRNA	-	-
ENST00000826513.1	LINC00840-246	829	No protein	-	lncRNA	-	-
ENST00000826490.1	LINC00840-223	811	No protein	-	lncRNA	-	-
ENST00000826510.1	LINC00840-243	796	No protein	-	lncRNA	-	-
ENST00000826496.1	LINC00840-229	746	No protein	-	lncRNA	-	-
ENST00000826494.1	LINC00840-227	738	No protein	-	lncRNA	-	-
ENST00000826509.1	LINC00840-242	676	No protein	-	lncRNA	-	-
ENST00000826495.1	LINC00840-228	580	No protein	-	lncRNA	-	-
ENST00000666387.1	LINC00840-218	562	No protein	-	lncRNA	-	-
ENST00000826503.1	LINC00840-236	531	No protein	-	lncRNA	-	-
ENST00000664505.1	LINC00840-215	507	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 1,227 bps,

Version

ENST00000667243.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000667243.1 LINC00840-219

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Transcript: ENST00000667243.1 LINC00840-219

Summary

About Us

Get help

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