Transcript: ENST00000667082.1 LINC00539-213

Description

long intergenic non-protein coding RNA 539 [Source:HGNC Symbol;Acc:HGNC:43672]

Gene Synonyms

LINC00422

Location

Chromosome 13: 21,302,862-21,313,412 reverse strand.

About this transcript

This transcript has 6 exons and maps to 376 oligo probes.

Gene

This transcript is a product of gene ENSG00000224429.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000434601.7	LINC00539-203	960	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000667082.1	LINC00539-213	2220	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000700723.1	LINC00539-217	1479	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661173.1	LINC00539-209	1474	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000700722.1	LINC00539-216	1473	No protein	-	lncRNA	-	-
ENST00000753374.1	LINC00539-219	1412	No protein	-	lncRNA	-	-
ENST00000664989.1	LINC00539-212	1390	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659153.1	LINC00539-207	1306	No protein	-	lncRNA	-	-
ENST00000753376.1	LINC00539-221	1267	No protein	-	lncRNA	-	-
ENST00000700724.1	LINC00539-218	1247	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000753375.1	LINC00539-220	1051	No protein	-	lncRNA	-	-
ENST00000655569.1	LINC00539-205	1050	No protein	-	lncRNA	-	-
ENST00000664392.1	LINC00539-211	1038	No protein	-	lncRNA	-	-
ENST00000661286.1	LINC00539-210	1014	No protein	-	lncRNA	-	-
ENST00000692188.2	LINC00539-215	989	No protein	-	lncRNA	-	-
ENST00000753381.1	LINC00539-226	942	No protein	-	lncRNA	-	-
ENST00000753380.1	LINC00539-225	934	No protein	-	lncRNA	-	-
ENST00000423575.6	LINC00539-202	918	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000753384.1	LINC00539-229	907	No protein	-	lncRNA	-	-
ENST00000608957.5	LINC00539-204	869	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000753377.1	LINC00539-222	820	No protein	-	lncRNA	-	-
ENST00000670912.1	LINC00539-214	813	No protein	-	lncRNA	-	-
ENST00000657403.1	LINC00539-206	792	No protein	-	lncRNA	-	-
ENST00000753385.1	LINC00539-230	789	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000753383.1	LINC00539-228	769	No protein	-	lncRNA	-	-
ENST00000753379.1	LINC00539-224	763	No protein	-	lncRNA	-	-
ENST00000753388.1	LINC00539-233	694	No protein	-	lncRNA	-	-
ENST00000411525.1	LINC00539-201	664	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000753386.1	LINC00539-231	658	No protein	-	lncRNA	-	-
ENST00000753389.1	LINC00539-234	652	No protein	-	lncRNA	-	-
ENST00000753378.1	LINC00539-223	616	No protein	-	lncRNA	-	-
ENST00000753390.1	LINC00539-235	538	No protein	-	lncRNA	-	-
ENST00000753387.1	LINC00539-232	525	No protein	-	lncRNA	-	-
ENST00000753391.1	LINC00539-236	525	No protein	-	lncRNA	-	-
ENST00000659380.1	LINC00539-208	513	No protein	-	lncRNA	-	-
ENST00000753382.1	LINC00539-227	476	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 2,220 bps,

Version

ENST00000667082.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000667082.1 LINC00539-213

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Transcript: ENST00000667082.1 LINC00539-213

Summary

About Us

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