Transcript: ENST00000666885.1 LINC00466-226

Description

long intergenic non-protein coding RNA 466 [Source:HGNC Symbol;Acc:HGNC:27294]

Location

Chromosome 1: 63,159,090-63,315,986 reverse strand.

About this transcript

This transcript has 11 exons and maps to 336 oligo probes.

Gene

This transcript is a product of gene ENSG00000224209.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000432537.2	LINC00466-202	434	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000717986.1	LINC00466-253	1189	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000717983.1	LINC00466-250	2218	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717981.1	LINC00466-248	2019	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658957.1	LINC00466-218	1751	No protein	-	lncRNA	-	-
ENST00000634725.1	LINC00466-207	1736	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000653027.1	LINC00466-211	1638	No protein	-	lncRNA	-	-
ENST00000656034.1	LINC00466-213	1592	No protein	-	lncRNA	-	-
ENST00000669810.1	LINC00466-231	1554	No protein	-	lncRNA	-	-
ENST00000635458.1	LINC00466-209	1554	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000666431.1	LINC00466-225	1535	No protein	-	lncRNA	-	-
ENST00000667005.1	LINC00466-227	1530	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656229.1	LINC00466-215	1498	No protein	-	lncRNA	-	-
ENST00000717988.1	LINC00466-255	1497	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000671620.1	LINC00466-233	1446	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000662017.1	LINC00466-220	1430	No protein	-	lncRNA	-	-
ENST00000717976.1	LINC00466-243	1424	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000660198.1	LINC00466-219	1418	No protein	-	lncRNA	-	-
ENST00000666885.1	LINC00466-226	1348	No protein	-	lncRNA	-	-
ENST00000655035.1	LINC00466-212	1339	No protein	-	lncRNA	-	-
ENST00000717984.1	LINC00466-251	1336	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658184.1	LINC00466-217	1308	No protein	-	lncRNA	-	-
ENST00000662911.1	LINC00466-221	1301	No protein	-	lncRNA	-	-
ENST00000717987.1	LINC00466-254	1292	No protein	-	lncRNA	-	-
ENST00000663270.1	LINC00466-222	1286	No protein	-	lncRNA	-	-
ENST00000634576.1	LINC00466-206	1279	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000664269.1	LINC00466-223	1253	No protein	-	lncRNA	-	-
ENST00000635218.1	LINC00466-208	1217	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000671553.1	LINC00466-232	1214	No protein	-	lncRNA	-	-
ENST00000717975.1	LINC00466-242	1212	No protein	-	lncRNA	-	-
ENST00000658104.1	LINC00466-216	1192	No protein	-	lncRNA	-	-
ENST00000717982.1	LINC00466-249	1134	No protein	-	lncRNA	-	-
ENST00000455304.6	LINC00466-205	1098	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000717985.1	LINC00466-252	1093	No protein	-	lncRNA	-	-
ENST00000436475.3	LINC00466-203	1092	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000667957.1	LINC00466-230	1079	No protein	-	lncRNA	-	-
ENST00000717989.1	LINC00466-256	1034	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000850654.1	LINC00466-257	1017	No protein	-	lncRNA	-	-
ENST00000635555.1	LINC00466-210	1016	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000717979.1	LINC00466-246	1004	No protein	-	lncRNA	-	-
ENST00000665381.1	LINC00466-224	948	No protein	-	lncRNA	-	-
ENST00000667879.1	LINC00466-229	907	No protein	-	lncRNA	-	-
ENST00000667523.2	LINC00466-228	833	No protein	-	lncRNA	-	-
ENST00000717980.1	LINC00466-247	829	No protein	-	lncRNA	-	-
ENST00000717970.1	LINC00466-237	818	No protein	-	lncRNA	-	-
ENST00000447183.3	LINC00466-204	785	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000656075.1	LINC00466-214	745	No protein	-	lncRNA	-	-
ENST00000717978.1	LINC00466-245	734	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717974.1	LINC00466-241	714	No protein	-	lncRNA	-	-
ENST00000717972.1	LINC00466-239	681	No protein	-	lncRNA	-	-
ENST00000717969.1	LINC00466-236	633	No protein	-	lncRNA	-	-
ENST00000717977.1	LINC00466-244	630	No protein	-	lncRNA	-	-
ENST00000717971.1	LINC00466-238	611	No protein	-	lncRNA	-	-
ENST00000717965.1	LINC00466-234	591	No protein	-	lncRNA	-	-
ENST00000717973.1	LINC00466-240	544	No protein	-	lncRNA	-	-
ENST00000717966.1	LINC00466-235	539	No protein	-	lncRNA	-	-
ENST00000418086.1	LINC00466-201	403	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 11, Coding exons: 0, Transcript length: 1,348 bps,

Version

ENST00000666885.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000666885.1 LINC00466-226

Summary

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Transcript: ENST00000666885.1 LINC00466-226

Summary

About Us

Get help

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