Transcript: ENST00000666806.1 SNHG17-272

Description

small nucleolar RNA host gene 17 [Source:HGNC Symbol;Acc:HGNC:48600]

Location

Chromosome 20: 38,420,588-38,426,077 reverse strand.

About this transcript

This transcript has 3 exons and maps to 336 oligo probes.

Gene

This transcript is a product of gene ENSG00000196756.16 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000701521.2	SNHG17-312	1261	No protein	-	lncRNA	NR_185934.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655692.1	SNHG17-223	2643	No protein	-	lncRNA	-	-
ENST00000781228.1	SNHG17-356	2368	No protein	-	lncRNA	-	-
ENST00000668482.2	SNHG17-280	2360	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000781210.1	SNHG17-338	2332	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000693250.1	SNHG17-307	2294	No protein	-	lncRNA	-	-
ENST00000667282.1	SNHG17-274	2292	No protein	-	lncRNA	-	-
ENST00000781208.1	SNHG17-336	2285	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668042.1	SNHG17-278	2261	No protein	-	lncRNA	-	-
ENST00000654389.1	SNHG17-218	2246	No protein	-	lncRNA	-	-
ENST00000781223.1	SNHG17-351	2234	No protein	-	lncRNA	-	-
ENST00000781211.1	SNHG17-339	2226	No protein	-	lncRNA	-	-
ENST00000781216.1	SNHG17-344	2202	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000691386.3	SNHG17-304	2184	No protein	-	lncRNA	-	-
ENST00000663534.2	SNHG17-253	2153	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000686814.2	SNHG17-291	2141	No protein	-	lncRNA	-	-
ENST00000449469.5	SNHG17-207	2138	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000657868.1	SNHG17-230	2120	No protein	-	lncRNA	-	-
ENST00000669405.1	SNHG17-284	2119	No protein	-	lncRNA	-	-
ENST00000781224.1	SNHG17-352	2107	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000664626.1	SNHG17-258	2103	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000414142.5	SNHG17-202	2102	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000654853.1	SNHG17-219	2079	No protein	-	lncRNA	-	-
ENST00000658455.1	SNHG17-235	2067	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659400.1	SNHG17-241	2047	No protein	-	lncRNA	-	-
ENST00000658076.3	SNHG17-232	2033	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656023.1	SNHG17-224	2023	No protein	-	lncRNA	-	-
ENST00000658051.2	SNHG17-231	1990	No protein	-	lncRNA	-	-
ENST00000660189.1	SNHG17-244	1977	No protein	-	lncRNA	-	-
ENST00000659102.1	SNHG17-238	1884	No protein	-	lncRNA	-	-
ENST00000658141.1	SNHG17-233	1882	No protein	-	lncRNA	-	-
ENST00000781244.1	SNHG17-372	1830	No protein	-	lncRNA	-	-
ENST00000666225.1	SNHG17-267	1798	No protein	-	lncRNA	-	-
ENST00000662982.4	SNHG17-251	1756	No protein	-	lncRNA	-	-
ENST00000781252.1	SNHG17-380	1749	No protein	-	lncRNA	-	-
ENST00000666806.1	SNHG17-272	1692	No protein	-	lncRNA	-	-
ENST00000659753.1	SNHG17-242	1691	No protein	-	lncRNA	-	-
ENST00000657429.1	SNHG17-227	1660	No protein	-	lncRNA	-	-
ENST00000659186.1	SNHG17-239	1582	No protein	-	lncRNA	-	-
ENST00000424235.2	SNHG17-205	1523	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000665693.1	SNHG17-265	1507	No protein	-	lncRNA	-	-
ENST00000693665.1	SNHG17-308	1474	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000660064.1	SNHG17-243	1444	No protein	-	lncRNA	-	-
ENST00000671309.1	SNHG17-289	1432	No protein	-	lncRNA	-	-
ENST00000781218.1	SNHG17-346	1377	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661252.1	SNHG17-247	1364	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000667912.1	SNHG17-277	1332	No protein	-	lncRNA	-	-
ENST00000667188.1	SNHG17-273	1316	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000691280.1	SNHG17-301	1314	No protein	-	lncRNA	-	-
ENST00000665735.2	SNHG17-266	1305	No protein	-	lncRNA	-	-
ENST00000668054.3	SNHG17-279	1292	No protein	-	lncRNA	-	-
ENST00000664964.1	SNHG17-260	1291	No protein	-	lncRNA	-	-
ENST00000781200.1	SNHG17-328	1285	No protein	-	lncRNA	-	-
ENST00000781214.1	SNHG17-342	1280	No protein	-	lncRNA	-	-
ENST00000653343.1	SNHG17-211	1279	No protein	-	lncRNA	-	-
ENST00000664636.2	SNHG17-259	1275	No protein	-	lncRNA	-	-
ENST00000669033.2	SNHG17-281	1274	No protein	-	lncRNA	-	-
ENST00000781226.1	SNHG17-354	1253	No protein	-	lncRNA	-	-
ENST00000686145.2	SNHG17-290	1246	No protein	-	lncRNA	-	-
ENST00000692262.2	SNHG17-305	1244	No protein	-	lncRNA	-	-
ENST00000670958.1	SNHG17-287	1240	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654008.2	SNHG17-215	1238	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000781193.1	SNHG17-321	1230	No protein	-	lncRNA	-	-
ENST00000660885.3	SNHG17-246	1226	No protein	-	lncRNA	-	-
ENST00000653697.1	SNHG17-212	1215	No protein	-	lncRNA	-	-
ENST00000665003.1	SNHG17-261	1212	No protein	-	lncRNA	-	-
ENST00000658324.1	SNHG17-234	1201	No protein	-	lncRNA	-	-
ENST00000657843.1	SNHG17-229	1200	No protein	-	lncRNA	-	-
ENST00000781213.1	SNHG17-341	1199	No protein	-	lncRNA	-	-
ENST00000670051.1	SNHG17-286	1195	No protein	-	lncRNA	-	-
ENST00000781212.1	SNHG17-340	1194	No protein	-	lncRNA	-	-
ENST00000688133.1	SNHG17-295	1193	No protein	-	lncRNA	-	-
ENST00000669114.1	SNHG17-282	1191	No protein	-	lncRNA	-	-
ENST00000666268.2	SNHG17-268	1191	No protein	-	lncRNA	-	-
ENST00000666331.1	SNHG17-269	1189	No protein	-	lncRNA	-	-
ENST00000671249.1	SNHG17-288	1181	No protein	-	lncRNA	-	-
ENST00000688336.1	SNHG17-296	1179	No protein	-	lncRNA	-	-
ENST00000658905.2	SNHG17-237	1177	No protein	-	lncRNA	-	-
ENST00000781235.1	SNHG17-363	1176	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000693227.1	SNHG17-306	1174	No protein	-	lncRNA	-	-
ENST00000664073.3	SNHG17-257	1168	No protein	-	lncRNA	-	-
ENST00000657665.2	SNHG17-228	1167	No protein	-	lncRNA	-	-
ENST00000689917.3	SNHG17-298	1156	No protein	-	lncRNA	-	-
ENST00000413755.7	SNHG17-201	1154	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000658488.3	SNHG17-236	1135	No protein	-	lncRNA	-	-
ENST00000666419.2	SNHG17-270	1133	No protein	-	lncRNA	-	-
ENST00000781209.1	SNHG17-337	1127	No protein	-	lncRNA	-	-
ENST00000687532.2	SNHG17-294	1125	No protein	-	lncRNA	-	-
ENST00000690361.2	SNHG17-299	1120	No protein	-	lncRNA	-	-
ENST00000701941.1	SNHG17-316	1120	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000693684.1	SNHG17-309	1117	No protein	-	lncRNA	-	-
ENST00000651115.2	SNHG17-209	1111	No protein	-	lncRNA	-	-
ENST00000669137.2	SNHG17-283	1110	No protein	-	lncRNA	-	-
ENST00000781236.1	SNHG17-364	1110	No protein	-	lncRNA	-	-
ENST00000701239.2	SNHG17-310	1109	No protein	-	lncRNA	-	-
ENST00000781220.1	SNHG17-348	1106	No protein	-	lncRNA	-	-
ENST00000781206.1	SNHG17-334	1103	No protein	-	lncRNA	-	-
ENST00000655311.1	SNHG17-221	1100	No protein	-	lncRNA	-	-
ENST00000781222.1	SNHG17-350	1093	No protein	-	lncRNA	-	-
ENST00000781233.1	SNHG17-361	1093	No protein	-	lncRNA	-	-
ENST00000781230.1	SNHG17-358	1093	No protein	-	lncRNA	-	-
ENST00000781232.1	SNHG17-360	1090	No protein	-	lncRNA	-	-
ENST00000686971.1	SNHG17-292	1086	No protein	-	lncRNA	-	-
ENST00000663955.2	SNHG17-256	1082	No protein	-	lncRNA	-	-
ENST00000691314.1	SNHG17-302	1080	No protein	-	lncRNA	-	-
ENST00000656320.2	SNHG17-225	1079	No protein	-	lncRNA	-	-
ENST00000701987.1	SNHG17-317	1077	No protein	-	lncRNA	-	-
ENST00000665181.2	SNHG17-262	1069	No protein	-	lncRNA	-	-
ENST00000781231.1	SNHG17-359	1067	No protein	-	lncRNA	-	-
ENST00000781238.1	SNHG17-366	1064	No protein	-	lncRNA	-	-
ENST00000456953.9	SNHG17-208	1063	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000781194.1	SNHG17-322	1063	No protein	-	lncRNA	-	-
ENST00000781191.1	SNHG17-319	1063	No protein	-	lncRNA	-	-
ENST00000687490.2	SNHG17-293	1061	No protein	-	lncRNA	-	-
ENST00000781237.1	SNHG17-365	1057	No protein	-	lncRNA	-	-
ENST00000781241.1	SNHG17-369	1055	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000781201.1	SNHG17-329	1051	No protein	-	lncRNA	-	-
ENST00000781203.1	SNHG17-331	1051	No protein	-	lncRNA	-	-
ENST00000701507.2	SNHG17-311	1048	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000781239.1	SNHG17-367	1043	No protein	-	lncRNA	-	-
ENST00000663540.3	SNHG17-254	1040	No protein	-	lncRNA	-	-
ENST00000657216.3	SNHG17-226	1040	No protein	-	lncRNA	-	-
ENST00000660558.3	SNHG17-245	1039	No protein	-	lncRNA	-	-
ENST00000665233.4	SNHG17-263	1036	No protein	-	lncRNA	-	-
ENST00000781197.1	SNHG17-325	1025	No protein	-	lncRNA	-	-
ENST00000665440.1	SNHG17-264	1022	No protein	-	lncRNA	-	-
ENST00000781199.1	SNHG17-327	1020	No protein	-	lncRNA	-	-
ENST00000662572.2	SNHG17-250	1017	No protein	-	lncRNA	-	-
ENST00000436764.9	SNHG17-206	1017	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000781205.1	SNHG17-333	1013	No protein	-	lncRNA	-	-
ENST00000781225.1	SNHG17-353	998	No protein	-	lncRNA	-	-
ENST00000659255.1	SNHG17-240	993	No protein	-	lncRNA	-	-
ENST00000662213.1	SNHG17-248	991	No protein	-	lncRNA	-	-
ENST00000417578.9	SNHG17-203	989	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000781219.1	SNHG17-347	981	No protein	-	lncRNA	-	-
ENST00000781217.1	SNHG17-345	976	No protein	-	lncRNA	-	-
ENST00000702019.2	SNHG17-318	972	No protein	-	lncRNA	-	-
ENST00000663187.1	SNHG17-252	969	No protein	-	lncRNA	-	-
ENST00000669480.1	SNHG17-285	968	No protein	-	lncRNA	-	-
ENST00000653938.1	SNHG17-214	960	No protein	-	lncRNA	-	-
ENST00000781221.1	SNHG17-349	959	No protein	-	lncRNA	-	-
ENST00000689414.3	SNHG17-297	958	No protein	-	lncRNA	-	-
ENST00000667835.1	SNHG17-276	954	No protein	-	lncRNA	-	-
ENST00000667412.1	SNHG17-275	954	No protein	-	lncRNA	-	-
ENST00000654092.1	SNHG17-216	953	No protein	-	lncRNA	-	-
ENST00000691368.2	SNHG17-303	936	No protein	-	lncRNA	-	-
ENST00000655520.3	SNHG17-222	926	No protein	-	lncRNA	-	-
ENST00000781243.1	SNHG17-371	923	No protein	-	lncRNA	-	-
ENST00000781204.1	SNHG17-332	921	No protein	-	lncRNA	-	-
ENST00000781198.1	SNHG17-326	905	No protein	-	lncRNA	-	-
ENST00000781196.1	SNHG17-324	899	No protein	-	lncRNA	-	-
ENST00000654183.3	SNHG17-217	892	No protein	-	lncRNA	-	-
ENST00000653753.1	SNHG17-213	888	No protein	-	lncRNA	-	-
ENST00000662568.1	SNHG17-249	879	No protein	-	lncRNA	-	-
ENST00000781195.1	SNHG17-323	862	No protein	-	lncRNA	-	-
ENST00000781229.1	SNHG17-357	860	No protein	-	lncRNA	-	-
ENST00000781215.1	SNHG17-343	855	No protein	-	lncRNA	-	-
ENST00000781234.1	SNHG17-362	852	No protein	-	lncRNA	-	-
ENST00000663784.1	SNHG17-255	846	No protein	-	lncRNA	-	-
ENST00000653277.1	SNHG17-210	840	No protein	-	lncRNA	-	-
ENST00000701736.2	SNHG17-313	836	No protein	-	lncRNA	-	-
ENST00000701793.2	SNHG17-314	828	No protein	-	lncRNA	-	-
ENST00000781227.1	SNHG17-355	807	No protein	-	lncRNA	-	-
ENST00000781192.1	SNHG17-320	798	No protein	-	lncRNA	-	-
ENST00000666549.2	SNHG17-271	794	No protein	-	lncRNA	-	-
ENST00000781242.1	SNHG17-370	784	No protein	-	lncRNA	-	-
ENST00000701819.2	SNHG17-315	782	No protein	-	lncRNA	-	-
ENST00000781248.1	SNHG17-376	754	No protein	-	lncRNA	-	-
ENST00000690441.2	SNHG17-300	746	No protein	-	lncRNA	-	-
ENST00000781251.1	SNHG17-379	745	No protein	-	lncRNA	-	-
ENST00000781245.1	SNHG17-373	744	No protein	-	lncRNA	-	-
ENST00000781202.1	SNHG17-330	722	No protein	-	lncRNA	-	-
ENST00000781247.1	SNHG17-375	721	No protein	-	lncRNA	-	-
ENST00000781246.1	SNHG17-374	712	No protein	-	lncRNA	-	-
ENST00000781207.1	SNHG17-335	689	No protein	-	lncRNA	-	-
ENST00000655198.1	SNHG17-220	681	No protein	-	lncRNA	-	-
ENST00000423536.6	SNHG17-204	674	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000781249.1	SNHG17-377	672	No protein	-	lncRNA	-	-
ENST00000781250.1	SNHG17-378	627	No protein	-	lncRNA	-	-
ENST00000781254.1	SNHG17-382	548	No protein	-	lncRNA	-	-
ENST00000781253.1	SNHG17-381	502	No protein	-	lncRNA	-	-
ENST00000781240.1	SNHG17-368	423	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,692 bps,

Version

ENST00000666806.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000666806.1 SNHG17-272

Summary

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Transcript: ENST00000666806.1 SNHG17-272

Summary

About Us

Get help

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