Transcript: ENST00000666574.1 LINC01709-212

Description

long intergenic non-protein coding RNA 1709 [Source:HGNC Symbol;Acc:HGNC:52497]

Location

Chromosome 1: 101,639,574-101,787,572 forward strand.

About this transcript

This transcript has 7 exons and maps to 60 oligo probes.

Gene

This transcript is a product of gene ENSG00000226715.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000657394.1	LINC01709-206	1373	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000648951.1	LINC01709-203	1726	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000666574.1	LINC01709-212	1550	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656484.1	LINC01709-205	1271	No protein	-	lncRNA	-	-
ENST00000665036.1	LINC01709-211	1269	No protein	-	lncRNA	-	-
ENST00000662434.1	LINC01709-208	1248	No protein	-	lncRNA	-	-
ENST00000635702.1	LINC01709-202	1204	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000771209.1	LINC01709-218	1140	No protein	-	lncRNA	-	-
ENST00000660911.1	LINC01709-207	1072	No protein	-	lncRNA	-	-
ENST00000664322.1	LINC01709-210	900	No protein	-	lncRNA	-	-
ENST00000669180.1	LINC01709-214	825	No protein	-	lncRNA	-	-
ENST00000771206.1	LINC01709-215	822	No protein	-	lncRNA	-	-
ENST00000668955.2	LINC01709-213	772	No protein	-	lncRNA	-	-
ENST00000663157.2	LINC01709-209	699	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000415532.3	LINC01709-201	652	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000655157.1	LINC01709-204	600	No protein	-	lncRNA	-	-
ENST00000771208.1	LINC01709-217	515	No protein	-	lncRNA	-	-
ENST00000771210.1	LINC01709-219	484	No protein	-	lncRNA	-	-
ENST00000771207.1	LINC01709-216	416	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 1,550 bps,

Version

ENST00000666574.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000666574.1 LINC01709-212

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Transcript: ENST00000666574.1 LINC01709-212

Summary

About Us

Get help

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