Transcript: ENST00000666531.2 LINC00683-228

Description

long intergenic non-protein coding RNA 683 [Source:HGNC Symbol;Acc:HGNC:44467]

Location

Chromosome 18: 76,619,381-76,623,570 forward strand.

About this transcript

This transcript has 2 exons and maps to 113 oligo probes.

Gene

This transcript is a product of gene ENSG00000266256.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000670438.1	LINC00683-232	1193	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000663049.2	LINC00683-224	3960	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000579781.2	LINC00683-204	3603	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000658647.1	LINC00683-220	3284	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000611889.2	LINC00683-209	2339	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000578613.6	LINC00683-202	2246	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000578803.2	LINC00683-203	2227	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000808289.1	LINC00683-278	2003	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000651395.1	LINC00683-212	1939	No protein	-	lncRNA	-	-
ENST00000808259.1	LINC00683-248	1812	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000808266.1	LINC00683-255	1695	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000808291.1	LINC00683-280	1674	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000808283.1	LINC00683-272	1657	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000651044.1	LINC00683-211	1651	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000808260.1	LINC00683-249	1618	No protein	-	lncRNA	-	-
ENST00000808288.1	LINC00683-277	1608	No protein	-	lncRNA	-	-
ENST00000661652.1	LINC00683-223	1557	No protein	-	lncRNA	-	-
ENST00000668375.1	LINC00683-229	1518	No protein	-	lncRNA	-	-
ENST00000808285.1	LINC00683-274	1501	No protein	-	lncRNA	-	-
ENST00000808257.1	LINC00683-246	1492	No protein	-	lncRNA	-	-
ENST00000655357.1	LINC00683-215	1470	No protein	-	lncRNA	-	-
ENST00000666531.2	LINC00683-228	1455	No protein	-	lncRNA	-	-
ENST00000616078.1	LINC00683-210	1455	No protein	-	lncRNA	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000653843.1	LINC00683-213	1444	No protein	-	lncRNA	-	-
ENST00000808272.1	LINC00683-261	1358	No protein	-	lncRNA	-	-
ENST00000808258.1	LINC00683-247	1348	No protein	-	lncRNA	-	-
ENST00000657675.1	LINC00683-218	1342	No protein	-	lncRNA	-	-
ENST00000665281.1	LINC00683-226	1316	No protein	-	lncRNA	-	-
ENST00000808274.1	LINC00683-263	1313	No protein	-	lncRNA	-	-
ENST00000808278.1	LINC00683-267	1309	No protein	-	lncRNA	-	-
ENST00000808275.1	LINC00683-264	1305	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000808284.1	LINC00683-273	1305	No protein	-	lncRNA	-	-
ENST00000808282.1	LINC00683-271	1300	No protein	-	lncRNA	-	-
ENST00000808267.1	LINC00683-256	1288	No protein	-	lncRNA	-	-
ENST00000658441.2	LINC00683-219	1282	No protein	-	lncRNA	-	-
ENST00000671551.1	LINC00683-234	1236	No protein	-	lncRNA	-	-
ENST00000668504.1	LINC00683-230	1229	No protein	-	lncRNA	-	-
ENST00000655528.1	LINC00683-216	1204	No protein	-	lncRNA	-	-
ENST00000808281.1	LINC00683-270	1163	No protein	-	lncRNA	-	-
ENST00000661369.1	LINC00683-222	1144	No protein	-	lncRNA	-	-
ENST00000808279.1	LINC00683-268	1139	No protein	-	lncRNA	-	-
ENST00000670618.1	LINC00683-233	1113	No protein	-	lncRNA	-	-
ENST00000808280.1	LINC00683-269	1109	No protein	-	lncRNA	-	-
ENST00000808292.1	LINC00683-281	1070	No protein	-	lncRNA	-	-
ENST00000808256.1	LINC00683-245	1058	No protein	-	lncRNA	-	-
ENST00000808265.1	LINC00683-254	1044	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000808273.1	LINC00683-262	1028	No protein	-	lncRNA	-	-
ENST00000655002.2	LINC00683-214	1008	No protein	-	lncRNA	-	-
ENST00000578092.6	LINC00683-201	1005	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000664503.2	LINC00683-225	989	No protein	-	lncRNA	-	-
ENST00000808247.1	LINC00683-236	986	No protein	-	lncRNA	-	-
ENST00000808286.1	LINC00683-275	924	No protein	-	lncRNA	-	-
ENST00000808287.1	LINC00683-276	916	No protein	-	lncRNA	-	-
ENST00000808262.1	LINC00683-251	915	No protein	-	lncRNA	-	-
ENST00000808248.1	LINC00683-237	868	No protein	-	lncRNA	-	-
ENST00000808249.1	LINC00683-238	862	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659606.2	LINC00683-221	843	No protein	-	lncRNA	-	-
ENST00000808268.1	LINC00683-257	832	No protein	-	lncRNA	-	-
ENST00000808251.1	LINC00683-240	821	No protein	-	lncRNA	-	-
ENST00000808261.1	LINC00683-250	815	No protein	-	lncRNA	-	-
ENST00000584120.1	LINC00683-207	789	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000808252.1	LINC00683-241	770	No protein	-	lncRNA	-	-
ENST00000656854.1	LINC00683-217	760	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000808269.1	LINC00683-258	728	No protein	-	lncRNA	-	-
ENST00000808250.1	LINC00683-239	723	No protein	-	lncRNA	-	-
ENST00000715841.1	LINC00683-235	695	No protein	-	lncRNA	-	-
ENST00000808254.1	LINC00683-243	691	No protein	-	lncRNA	-	-
ENST00000583578.6	LINC00683-206	687	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000808253.1	LINC00683-242	678	No protein	-	lncRNA	-	-
ENST00000808263.1	LINC00683-252	655	No protein	-	lncRNA	-	-
ENST00000808255.1	LINC00683-244	642	No protein	-	lncRNA	-	-
ENST00000808293.1	LINC00683-282	631	No protein	-	lncRNA	-	-
ENST00000808276.1	LINC00683-265	623	No protein	-	lncRNA	-	-
ENST00000669527.1	LINC00683-231	614	No protein	-	lncRNA	-	-
ENST00000584910.6	LINC00683-208	570	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000666393.1	LINC00683-227	565	No protein	-	lncRNA	-	-
ENST00000808290.1	LINC00683-279	561	No protein	-	lncRNA	-	-
ENST00000808271.1	LINC00683-260	560	No protein	-	lncRNA	-	-
ENST00000808270.1	LINC00683-259	515	No protein	-	lncRNA	-	-
ENST00000808277.1	LINC00683-266	498	No protein	-	lncRNA	-	-
ENST00000808264.1	LINC00683-253	492	No protein	-	lncRNA	-	-
ENST00000582452.2	LINC00683-205	483	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 1,455 bps,

Version

ENST00000666531.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000666531.2 LINC00683-228

Summary

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Transcript: ENST00000666531.2 LINC00683-228

Summary

About Us

Get help

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