Transcript: ENST00000666427.1 LINC00858-208

Description

long intergenic non-protein coding RNA 858 [Source:HGNC Symbol;Acc:HGNC:27276]

Gene Synonyms

CRCAL-2, LNMAT2

Location

Chromosome 10: 84,279,997-84,294,657 forward strand.

About this transcript

This transcript has 7 exons and maps to 199 oligo probes.

Gene

This transcript is a product of gene ENSG00000229404.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000661556.1	LINC00858-205	1400	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000415469.5	LINC00858-201	2685	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000817597.1	LINC00858-211	2498	No protein	-	lncRNA	-	-
ENST00000666427.1	LINC00858-208	2234	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000817598.1	LINC00858-212	2097	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000817599.1	LINC00858-213	2082	No protein	-	lncRNA	-	-
ENST00000817600.1	LINC00858-214	1997	No protein	-	lncRNA	-	-
ENST00000663433.1	LINC00858-207	1833	No protein	-	lncRNA	-	-
ENST00000653603.1	LINC00858-203	1724	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661758.1	LINC00858-206	1720	No protein	-	lncRNA	-	-
ENST00000817596.1	LINC00858-210	1659	No protein	-	lncRNA	-	-
ENST00000817606.1	LINC00858-220	1593	No protein	-	lncRNA	-	-
ENST00000817603.1	LINC00858-217	1568	No protein	-	lncRNA	-	-
ENST00000669640.1	LINC00858-209	1516	No protein	-	lncRNA	-	-
ENST00000817601.1	LINC00858-215	1395	No protein	-	lncRNA	-	-
ENST00000437892.2	LINC00858-202	1331	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000817605.1	LINC00858-219	1098	No protein	-	lncRNA	-	-
ENST00000661042.1	LINC00858-204	1094	No protein	-	lncRNA	-	-
ENST00000817604.1	LINC00858-218	978	No protein	-	lncRNA	-	-
ENST00000817602.1	LINC00858-216	648	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 2,234 bps,

Version

ENST00000666427.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000666427.1 LINC00858-208

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Transcript: ENST00000666427.1 LINC00858-208

Summary

About Us

Get help

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