Transcript: ENST00000666093.1 LINC02840-210

Description

long intergenic non-protein coding RNA 2840 [Source:HGNC Symbol;Acc:HGNC:54374]

Location

Chromosome 6: 152,754,903-152,875,832 reverse strand.

About this transcript

This transcript has 5 exons, is associated with 51683 variant alleles and maps to 31 oligo probes.

Gene

This transcript is a product of gene ENSG00000224893.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000666093.1	LINC02840-210	4418	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000663653.1	LINC02840-209	2958	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656248.1	LINC02840-205	2041	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670640.1	LINC02840-213	1708	No protein	-	lncRNA	-	-
ENST00000667732.1	LINC02840-211	1665	No protein	-	lncRNA	-	-
ENST00000658966.1	LINC02840-207	1437	No protein	-	lncRNA	-	-
ENST00000671138.1	LINC02840-214	1244	No protein	-	lncRNA	-	-
ENST00000657202.1	LINC02840-206	1225	No protein	-	lncRNA	-	-
ENST00000670414.1	LINC02840-212	1049	No protein	-	lncRNA	-	-
ENST00000654424.1	LINC02840-204	997	No protein	-	lncRNA	-	-
ENST00000652681.1	LINC02840-203	811	No protein	-	lncRNA	-	-
ENST00000659837.1	LINC02840-208	744	No protein	-	lncRNA	-	-
ENST00000417654.2	LINC02840-201	610	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000456715.5	LINC02840-202	442	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 4,418 bps,

Version

ENST00000666093.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000666093.1 LINC02840-210

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Transcript: ENST00000666093.1 LINC02840-210

Summary

About Us

Get help

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