Transcript: ENST00000665955.1 PANTR1-213

Description

POU3F3 adjacent non-coding transcript 1 [Source:HGNC Symbol;Acc:HGNC:49513]

Gene Synonyms

LINC-BRN1A, LINC-POU3F3, LINC01158

Location

Chromosome 2: 104,807,585-104,813,861 reverse strand.

About this transcript

This transcript has 3 exons and maps to 221 oligo probes.

Gene

This transcript is a product of gene ENSG00000233639.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000733170.1	PANTR1-227	2706	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661120.1	PANTR1-211	5286	No protein	-	lncRNA	-	-
ENST00000669335.1	PANTR1-214	4963	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000715831.1	PANTR1-226	4092	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000443988.8	PANTR1-205	3570	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000733219.1	PANTR1-276	3124	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659645.1	PANTR1-210	2650	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000425879.1	PANTR1-204	2434	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000733172.1	PANTR1-229	2218	No protein	-	lncRNA	-	-
ENST00000424321.6	PANTR1-203	2113	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000733171.1	PANTR1-228	2088	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000715830.1	PANTR1-225	1973	No protein	-	lncRNA	-	-
ENST00000733220.1	PANTR1-277	1792	No protein	-	lncRNA	-	-
ENST00000653760.1	PANTR1-209	1725	No protein	-	lncRNA	-	-
ENST00000686273.2	PANTR1-218	1613	No protein	-	lncRNA	-	-
ENST00000665955.1	PANTR1-213	1598	No protein	-	lncRNA	-	-
ENST00000733236.1	PANTR1-293	1492	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000454729.3	PANTR1-207	1125	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000733231.1	PANTR1-288	1073	No protein	-	lncRNA	-	-
ENST00000733234.1	PANTR1-291	1043	No protein	-	lncRNA	-	-
ENST00000733174.1	PANTR1-231	1035	No protein	-	lncRNA	-	-
ENST00000447876.6	PANTR1-206	1020	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000689061.2	PANTR1-220	989	No protein	-	lncRNA	-	-
ENST00000733233.1	PANTR1-290	974	No protein	-	lncRNA	-	-
ENST00000733173.1	PANTR1-230	948	No protein	-	lncRNA	-	-
ENST00000733177.1	PANTR1-234	941	No protein	-	lncRNA	-	-
ENST00000733190.1	PANTR1-247	934	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000733198.1	PANTR1-255	928	No protein	-	lncRNA	-	-
ENST00000733201.1	PANTR1-258	928	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000733237.1	PANTR1-294	922	No protein	-	lncRNA	-	-
ENST00000733179.1	PANTR1-236	915	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000733223.1	PANTR1-280	909	No protein	-	lncRNA	-	-
ENST00000733235.1	PANTR1-292	894	No protein	-	lncRNA	-	-
ENST00000733209.1	PANTR1-266	883	No protein	-	lncRNA	-	-
ENST00000702984.2	PANTR1-224	881	No protein	-	lncRNA	-	-
ENST00000702977.2	PANTR1-223	872	No protein	-	lncRNA	-	-
ENST00000733178.1	PANTR1-235	865	No protein	-	lncRNA	-	-
ENST00000458253.7	PANTR1-208	861	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000733207.1	PANTR1-264	852	No protein	-	lncRNA	-	-
ENST00000733229.1	PANTR1-286	841	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000733175.1	PANTR1-232	831	No protein	-	lncRNA	-	-
ENST00000664478.2	PANTR1-212	830	No protein	-	lncRNA	-	-
ENST00000733212.1	PANTR1-269	829	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000733216.1	PANTR1-273	826	No protein	-	lncRNA	-	-
ENST00000733199.1	PANTR1-256	818	No protein	-	lncRNA	-	-
ENST00000733183.1	PANTR1-240	814	No protein	-	lncRNA	-	-
ENST00000685537.2	PANTR1-216	813	No protein	-	lncRNA	-	-
ENST00000684827.2	PANTR1-215	811	No protein	-	lncRNA	-	-
ENST00000733187.1	PANTR1-244	811	No protein	-	lncRNA	-	-
ENST00000733211.1	PANTR1-268	802	No protein	-	lncRNA	-	-
ENST00000733221.1	PANTR1-278	795	No protein	-	lncRNA	-	-
ENST00000733218.1	PANTR1-275	792	No protein	-	lncRNA	-	-
ENST00000733196.1	PANTR1-253	791	No protein	-	lncRNA	-	-
ENST00000733232.1	PANTR1-289	789	No protein	-	lncRNA	-	-
ENST00000733206.1	PANTR1-263	787	No protein	-	lncRNA	-	-
ENST00000733240.1	PANTR1-297	783	No protein	-	lncRNA	-	-
ENST00000733238.1	PANTR1-295	782	No protein	-	lncRNA	-	-
ENST00000733226.1	PANTR1-283	781	No protein	-	lncRNA	-	-
ENST00000733214.1	PANTR1-271	771	No protein	-	lncRNA	-	-
ENST00000733184.1	PANTR1-241	758	No protein	-	lncRNA	-	-
ENST00000733230.1	PANTR1-287	757	No protein	-	lncRNA	-	-
ENST00000733186.1	PANTR1-243	741	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000733200.1	PANTR1-257	737	No protein	-	lncRNA	-	-
ENST00000733204.1	PANTR1-261	726	No protein	-	lncRNA	-	-
ENST00000686195.2	PANTR1-217	718	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000688250.3	PANTR1-219	714	No protein	-	lncRNA	-	-
ENST00000733210.1	PANTR1-267	712	No protein	-	lncRNA	-	-
ENST00000733181.1	PANTR1-238	710	No protein	-	lncRNA	-	-
ENST00000693148.3	PANTR1-222	709	No protein	-	lncRNA	-	-
ENST00000733215.1	PANTR1-272	704	No protein	-	lncRNA	-	-
ENST00000733182.1	PANTR1-239	700	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000733185.1	PANTR1-242	668	No protein	-	lncRNA	-	-
ENST00000413121.7	PANTR1-201	666	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000733176.1	PANTR1-233	662	No protein	-	lncRNA	-	-
ENST00000733191.1	PANTR1-248	648	No protein	-	lncRNA	-	-
ENST00000733180.1	PANTR1-237	637	No protein	-	lncRNA	-	-
ENST00000733228.1	PANTR1-285	625	No protein	-	lncRNA	-	-
ENST00000733225.1	PANTR1-282	614	No protein	-	lncRNA	-	-
ENST00000733239.1	PANTR1-296	611	No protein	-	lncRNA	-	-
ENST00000733227.1	PANTR1-284	600	No protein	-	lncRNA	-	-
ENST00000733197.1	PANTR1-254	598	No protein	-	lncRNA	-	-
ENST00000733222.1	PANTR1-279	594	No protein	-	lncRNA	-	-
ENST00000733194.1	PANTR1-251	588	No protein	-	lncRNA	-	-
ENST00000733203.1	PANTR1-260	578	No protein	-	lncRNA	-	-
ENST00000733217.1	PANTR1-274	573	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000733208.1	PANTR1-265	571	No protein	-	lncRNA	-	-
ENST00000733224.1	PANTR1-281	555	No protein	-	lncRNA	-	-
ENST00000733193.1	PANTR1-250	523	No protein	-	lncRNA	-	-
ENST00000733205.1	PANTR1-262	515	No protein	-	lncRNA	-	-
ENST00000421071.1	PANTR1-202	482	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000733192.1	PANTR1-249	478	No protein	-	lncRNA	-	-
ENST00000733188.1	PANTR1-245	477	No protein	-	lncRNA	-	-
ENST00000733213.1	PANTR1-270	473	No protein	-	lncRNA	-	-
ENST00000691114.2	PANTR1-221	443	No protein	-	lncRNA	-	-
ENST00000733202.1	PANTR1-259	401	No protein	-	lncRNA	-	-
ENST00000733189.1	PANTR1-246	388	No protein	-	lncRNA	-	-
ENST00000733195.1	PANTR1-252	386	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 1,598 bps,

Version

ENST00000665955.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000665955.1 PANTR1-213

Summary

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Transcript: ENST00000665955.1 PANTR1-213

Summary

About Us

Get help

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