Transcript: ENST00000665909.1 LINC01287-223

Description

long intergenic non-protein coding RNA 1287 [Source:HGNC Symbol;Acc:HGNC:50351]

Gene Synonyms

TCONS_L2_00027522

Location

Chromosome 7: 153,400,313-153,413,934 reverse strand.

About this transcript

This transcript has 4 exons and maps to 204 oligo probes.

Gene

This transcript is a product of gene ENSG00000234722.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000647863.1	LINC01287-204	1958	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000669109.1	LINC01287-229	2859	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000416982.1	LINC01287-201	2624	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000661082.1	LINC01287-212	2476	No protein	-	lncRNA	-	-
ENST00000657245.1	LINC01287-207	2318	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659532.1	LINC01287-210	1865	No protein	-	lncRNA	-	-
ENST00000655449.1	LINC01287-206	1712	No protein	-	lncRNA	-	-
ENST00000666243.1	LINC01287-224	1702	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670171.1	LINC01287-235	1694	No protein	-	lncRNA	-	-
ENST00000670362.1	LINC01287-237	1650	No protein	-	lncRNA	-	-
ENST00000669043.1	LINC01287-227	1649	No protein	-	lncRNA	-	-
ENST00000669370.1	LINC01287-231	1632	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670691.1	LINC01287-238	1620	No protein	-	lncRNA	-	-
ENST00000662626.1	LINC01287-215	1613	No protein	-	lncRNA	-	-
ENST00000669818.1	LINC01287-234	1536	No protein	-	lncRNA	-	-
ENST00000662256.1	LINC01287-214	1532	No protein	-	lncRNA	-	-
ENST00000669159.1	LINC01287-230	1471	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000662979.1	LINC01287-216	1457	No protein	-	lncRNA	-	-
ENST00000665005.1	LINC01287-221	1455	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000663904.1	LINC01287-218	1391	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670343.1	LINC01287-236	1364	No protein	-	lncRNA	-	-
ENST00000668024.1	LINC01287-226	1329	No protein	-	lncRNA	-	-
ENST00000661522.1	LINC01287-213	1315	No protein	-	lncRNA	-	-
ENST00000669107.1	LINC01287-228	1228	No protein	-	lncRNA	-	-
ENST00000658825.1	LINC01287-209	1208	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000671302.1	LINC01287-239	1202	No protein	-	lncRNA	-	-
ENST00000653989.1	LINC01287-205	1193	No protein	-	lncRNA	-	-
ENST00000667969.1	LINC01287-225	1179	No protein	-	lncRNA	-	-
ENST00000660414.1	LINC01287-211	1138	No protein	-	lncRNA	-	-
ENST00000669806.1	LINC01287-233	1127	No protein	-	lncRNA	-	-
ENST00000669410.1	LINC01287-232	1112	No protein	-	lncRNA	-	-
ENST00000774316.1	LINC01287-241	1110	No protein	-	lncRNA	-	-
ENST00000658753.1	LINC01287-208	1087	No protein	-	lncRNA	-	-
ENST00000454441.2	LINC01287-203	1007	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000664034.1	LINC01287-219	997	No protein	-	lncRNA	-	-
ENST00000663745.1	LINC01287-217	971	No protein	-	lncRNA	-	-
ENST00000665909.1	LINC01287-223	917	No protein	-	lncRNA	-	-
ENST00000665256.1	LINC01287-222	896	No protein	-	lncRNA	-	-
ENST00000453187.2	LINC01287-202	670	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000664249.1	LINC01287-220	520	No protein	-	lncRNA	-	-
ENST00000774315.1	LINC01287-240	309	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 917 bps,

Version

ENST00000665909.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000665909.1 LINC01287-223

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000665909.1 LINC01287-223

Summary

About Us

Get help

Our sister sites

Follow us