Transcript: ENST00000665747.1 LINC00343-278

Description

long intergenic non-protein coding RNA 343 [Source:HGNC Symbol;Acc:HGNC:42500]

Gene Synonyms

LINC00344, NCRNA00343, NCRNA00344

Location

Chromosome 13: 105,706,862-105,731,715 forward strand.

About this transcript

This transcript has 8 exons and maps to 322 oligo probes.

Gene

This transcript is a product of gene ENSG00000226620.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000414368.2	LINC00343-201	864	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000669840.1	LINC00343-310	2367	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000661872.2	LINC00343-260	2920	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670429.1	LINC00343-317	2512	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658151.1	LINC00343-241	2491	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000671060.1	LINC00343-328	2485	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654132.1	LINC00343-218	2295	No protein	-	lncRNA	-	-
ENST00000667582.1	LINC00343-289	2271	No protein	-	lncRNA	-	-
ENST00000669807.1	LINC00343-309	2259	No protein	-	lncRNA	-	-
ENST00000661782.1	LINC00343-258	2223	No protein	-	lncRNA	-	-
ENST00000667492.1	LINC00343-287	2170	No protein	-	lncRNA	-	-
ENST00000666723.1	LINC00343-282	2044	No protein	-	lncRNA	-	-
ENST00000608624.6	LINC00343-212	2028	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000671026.1	LINC00343-326	2023	No protein	-	lncRNA	-	-
ENST00000668279.1	LINC00343-294	2019	No protein	-	lncRNA	-	-
ENST00000660976.1	LINC00343-255	2011	No protein	-	lncRNA	-	-
ENST00000670771.1	LINC00343-323	1983	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670303.1	LINC00343-315	1867	No protein	-	lncRNA	-	-
ENST00000655062.1	LINC00343-222	1828	No protein	-	lncRNA	-	-
ENST00000663594.1	LINC00343-267	1810	No protein	-	lncRNA	-	-
ENST00000599264.3	LINC00343-208	1807	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000667534.1	LINC00343-288	1799	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661301.1	LINC00343-257	1774	No protein	-	lncRNA	-	-
ENST00000454555.2	LINC00343-203	1765	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000415294.3	LINC00343-202	1762	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000661817.1	LINC00343-259	1745	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000660294.2	LINC00343-252	1726	No protein	-	lncRNA	-	-
ENST00000660560.1	LINC00343-253	1720	No protein	-	lncRNA	-	-
ENST00000656479.1	LINC00343-231	1701	No protein	-	lncRNA	-	-
ENST00000668581.1	LINC00343-297	1701	No protein	-	lncRNA	-	-
ENST00000656615.1	LINC00343-233	1672	No protein	-	lncRNA	-	-
ENST00000653178.1	LINC00343-214	1671	No protein	-	lncRNA	-	-
ENST00000669959.1	LINC00343-313	1660	No protein	-	lncRNA	-	-
ENST00000657324.1	LINC00343-236	1643	No protein	-	lncRNA	-	-
ENST00000670308.1	LINC00343-316	1629	No protein	-	lncRNA	-	-
ENST00000669887.1	LINC00343-312	1627	No protein	-	lncRNA	-	-
ENST00000653082.1	LINC00343-213	1608	No protein	-	lncRNA	-	-
ENST00000668939.1	LINC00343-298	1591	No protein	-	lncRNA	-	-
ENST00000656539.2	LINC00343-232	1580	No protein	-	lncRNA	-	-
ENST00000655206.1	LINC00343-225	1570	No protein	-	lncRNA	-	-
ENST00000665747.1	LINC00343-278	1559	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000664522.1	LINC00343-274	1557	No protein	-	lncRNA	-	-
ENST00000671402.1	LINC00343-329	1556	No protein	-	lncRNA	-	-
ENST00000669264.1	LINC00343-302	1555	No protein	-	lncRNA	-	-
ENST00000666322.1	LINC00343-280	1536	No protein	-	lncRNA	-	-
ENST00000668272.1	LINC00343-293	1535	No protein	-	lncRNA	-	-
ENST00000659909.1	LINC00343-250	1532	No protein	-	lncRNA	-	-
ENST00000670546.1	LINC00343-321	1520	No protein	-	lncRNA	-	-
ENST00000655741.1	LINC00343-228	1515	No protein	-	lncRNA	-	-
ENST00000669497.1	LINC00343-303	1512	No protein	-	lncRNA	-	-
ENST00000662500.1	LINC00343-262	1510	No protein	-	lncRNA	-	-
ENST00000659165.1	LINC00343-247	1500	No protein	-	lncRNA	-	-
ENST00000663194.1	LINC00343-265	1492	No protein	-	lncRNA	-	-
ENST00000666696.1	LINC00343-281	1491	No protein	-	lncRNA	-	-
ENST00000669144.1	LINC00343-301	1482	No protein	-	lncRNA	-	-
ENST00000663969.1	LINC00343-270	1481	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658024.1	LINC00343-239	1480	No protein	-	lncRNA	-	-
ENST00000655448.1	LINC00343-226	1476	No protein	-	lncRNA	-	-
ENST00000666948.1	LINC00343-283	1474	No protein	-	lncRNA	-	-
ENST00000661079.1	LINC00343-256	1459	No protein	-	lncRNA	-	-
ENST00000656267.2	LINC00343-229	1452	No protein	-	lncRNA	-	-
ENST00000658095.2	LINC00343-240	1450	No protein	-	lncRNA	-	-
ENST00000660821.1	LINC00343-254	1446	No protein	-	lncRNA	-	-
ENST00000669886.1	LINC00343-311	1426	No protein	-	lncRNA	-	-
ENST00000656920.1	LINC00343-235	1423	No protein	-	lncRNA	-	-
ENST00000668396.1	LINC00343-296	1418	No protein	-	lncRNA	-	-
ENST00000669655.1	LINC00343-306	1413	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658308.1	LINC00343-243	1412	No protein	-	lncRNA	-	-
ENST00000664090.1	LINC00343-271	1409	No protein	-	lncRNA	-	-
ENST00000670530.1	LINC00343-320	1405	No protein	-	lncRNA	-	-
ENST00000654086.1	LINC00343-217	1405	No protein	-	lncRNA	-	-
ENST00000669507.1	LINC00343-304	1398	No protein	-	lncRNA	-	-
ENST00000654352.1	LINC00343-219	1398	No protein	-	lncRNA	-	-
ENST00000664201.1	LINC00343-273	1390	No protein	-	lncRNA	-	-
ENST00000671516.1	LINC00343-330	1389	No protein	-	lncRNA	-	-
ENST00000667217.1	LINC00343-285	1389	No protein	-	lncRNA	-	-
ENST00000670821.1	LINC00343-324	1387	No protein	-	lncRNA	-	-
ENST00000663045.1	LINC00343-264	1377	No protein	-	lncRNA	-	-
ENST00000671561.1	LINC00343-331	1376	No protein	-	lncRNA	-	-
ENST00000658169.1	LINC00343-242	1376	No protein	-	lncRNA	-	-
ENST00000653600.1	LINC00343-216	1375	No protein	-	lncRNA	-	-
ENST00000831907.1	LINC00343-345	1362	No protein	-	lncRNA	-	-
ENST00000670430.1	LINC00343-318	1361	No protein	-	lncRNA	-	-
ENST00000665309.1	LINC00343-277	1348	No protein	-	lncRNA	-	-
ENST00000831896.1	LINC00343-334	1344	No protein	-	lncRNA	-	-
ENST00000668362.1	LINC00343-295	1333	No protein	-	lncRNA	-	-
ENST00000667987.1	LINC00343-291	1325	No protein	-	lncRNA	-	-
ENST00000658711.1	LINC00343-245	1325	No protein	-	lncRNA	-	-
ENST00000655625.1	LINC00343-227	1321	No protein	-	lncRNA	-	-
ENST00000654919.1	LINC00343-221	1319	No protein	-	lncRNA	-	-
ENST00000659496.1	LINC00343-249	1319	No protein	-	lncRNA	-	-
ENST00000667685.1	LINC00343-290	1315	No protein	-	lncRNA	-	-
ENST00000654904.1	LINC00343-220	1308	No protein	-	lncRNA	-	-
ENST00000656646.1	LINC00343-234	1298	No protein	-	lncRNA	-	-
ENST00000658692.1	LINC00343-244	1289	No protein	-	lncRNA	-	-
ENST00000670433.1	LINC00343-319	1284	No protein	-	lncRNA	-	-
ENST00000598478.2	LINC00343-206	1283	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000671053.1	LINC00343-327	1282	No protein	-	lncRNA	-	-
ENST00000655173.1	LINC00343-223	1278	No protein	-	lncRNA	-	-
ENST00000664796.1	LINC00343-276	1266	No protein	-	lncRNA	-	-
ENST00000661976.2	LINC00343-261	1261	No protein	-	lncRNA	-	-
ENST00000669035.1	LINC00343-300	1261	No protein	-	lncRNA	-	-
ENST00000667106.1	LINC00343-284	1252	No protein	-	lncRNA	-	-
ENST00000659258.2	LINC00343-248	1250	No protein	-	lncRNA	-	-
ENST00000663744.1	LINC00343-268	1247	No protein	-	lncRNA	-	-
ENST00000831900.1	LINC00343-338	1239	No protein	-	lncRNA	-	-
ENST00000831903.1	LINC00343-341	1232	No protein	-	lncRNA	-	-
ENST00000657599.1	LINC00343-237	1228	No protein	-	lncRNA	-	-
ENST00000670977.1	LINC00343-325	1224	No protein	-	lncRNA	-	-
ENST00000669675.1	LINC00343-307	1215	No protein	-	lncRNA	-	-
ENST00000663761.1	LINC00343-269	1214	No protein	-	lncRNA	-	-
ENST00000669706.1	LINC00343-308	1208	No protein	-	lncRNA	-	-
ENST00000653504.1	LINC00343-215	1200	No protein	-	lncRNA	-	-
ENST00000660236.1	LINC00343-251	1190	No protein	-	lncRNA	-	-
ENST00000664695.1	LINC00343-275	1188	No protein	-	lncRNA	-	-
ENST00000656290.1	LINC00343-230	1169	No protein	-	lncRNA	-	-
ENST00000655201.1	LINC00343-224	1166	No protein	-	lncRNA	-	-
ENST00000596398.6	LINC00343-204	1161	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000663287.1	LINC00343-266	1153	No protein	-	lncRNA	-	-
ENST00000666040.1	LINC00343-279	1139	No protein	-	lncRNA	-	-
ENST00000670555.2	LINC00343-322	1139	No protein	-	lncRNA	-	-
ENST00000831906.1	LINC00343-344	1138	No protein	-	lncRNA	-	-
ENST00000659016.1	LINC00343-246	1118	No protein	-	lncRNA	-	-
ENST00000831905.1	LINC00343-343	1107	No protein	-	lncRNA	-	-
ENST00000664140.1	LINC00343-272	1105	No protein	-	lncRNA	-	-
ENST00000669540.1	LINC00343-305	1105	No protein	-	lncRNA	-	-
ENST00000667429.1	LINC00343-286	1103	No protein	-	lncRNA	-	-
ENST00000668080.1	LINC00343-292	1099	No protein	-	lncRNA	-	-
ENST00000831897.1	LINC00343-335	1087	No protein	-	lncRNA	-	-
ENST00000670114.1	LINC00343-314	1077	No protein	-	lncRNA	-	-
ENST00000657690.1	LINC00343-238	1026	No protein	-	lncRNA	-	-
ENST00000608426.2	LINC00343-211	1010	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000599179.2	LINC00343-207	1005	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000598229.2	LINC00343-205	1001	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000601607.6	LINC00343-209	944	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000831894.1	LINC00343-332	941	No protein	-	lncRNA	-	-
ENST00000831895.1	LINC00343-333	928	No protein	-	lncRNA	-	-
ENST00000662776.1	LINC00343-263	899	No protein	-	lncRNA	-	-
ENST00000608220.6	LINC00343-210	847	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000831898.1	LINC00343-336	729	No protein	-	lncRNA	-	-
ENST00000831901.1	LINC00343-339	718	No protein	-	lncRNA	-	-
ENST00000668966.1	LINC00343-299	646	No protein	-	lncRNA	-	-
ENST00000831899.1	LINC00343-337	631	No protein	-	lncRNA	-	-
ENST00000831902.1	LINC00343-340	629	No protein	-	lncRNA	-	-
ENST00000831904.1	LINC00343-342	589	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 8, Coding exons: 0, Transcript length: 1,559 bps,

Version

ENST00000665747.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Annotation Attributes

nested 454 RNA-Seq supported [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000665747.1 LINC00343-278

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Transcript: ENST00000665747.1 LINC00343-278

Summary

About Us

Get help

Our sister sites

Follow us