Transcript: ENST00000665543.1 LINC02874-206

Description

long intergenic non-protein coding RNA 2874 [Source:HGNC Symbol;Acc:HGNC:27473]

Gene Synonyms

C12ORF80

Location

Chromosome 12: 52,205,392-52,210,839 reverse strand.

About this transcript

This transcript has 4 exons and maps to 195 oligo probes.

Gene

This transcript is a product of gene ENSG00000257137.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000806904.1	LINC02874-207	829	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000665543.1	LINC02874-206	1465	No protein	-	lncRNA	-	-
ENST00000639627.1	LINC02874-204	1220	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000551894.6	LINC02874-202	1158	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000806905.1	LINC02874-208	1152	No protein	-	lncRNA	-	-
ENST00000806906.1	LINC02874-209	1124	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000806912.1	LINC02874-215	1033	No protein	-	lncRNA	-	-
ENST00000806910.1	LINC02874-213	1012	No protein	-	lncRNA	-	-
ENST00000806909.1	LINC02874-212	986	No protein	-	lncRNA	-	-
ENST00000806911.1	LINC02874-214	935	No protein	-	lncRNA	-	-
ENST00000656354.2	LINC02874-205	922	No protein	-	lncRNA	-	-
ENST00000806908.1	LINC02874-211	899	No protein	-	lncRNA	-	-
ENST00000806907.1	LINC02874-210	888	No protein	-	lncRNA	-	-
ENST00000551332.1	LINC02874-201	823	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000806914.1	LINC02874-217	753	No protein	-	lncRNA	-	-
ENST00000806913.1	LINC02874-216	746	No protein	-	lncRNA	-	-
ENST00000553017.1	LINC02874-203	571	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,465 bps,

Version

ENST00000665543.1

Type

LncRNA

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana (TAGENE) manual annotation have the same sequence, for every base pair. See article.

Transcript: ENST00000665543.1 LINC02874-206

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Transcript: ENST00000665543.1 LINC02874-206

Summary

About Us

Get help

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