Transcript: ENST00000665476.1 LINC00620-203

Description

long intergenic non-protein coding RNA 620 [Source:HGNC Symbol;Acc:HGNC:44223]

Location

Chromosome 3: 13,650,733-13,746,638 forward strand.

About this transcript

This transcript has 7 exons and maps to 225 oligo probes.

Gene

This transcript is a product of gene ENSG00000224514.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000438915.2	LINC00620-202	614	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000665476.1	LINC00620-203	1008	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000419618.2	LINC00620-201	996	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000822215.1	LINC00620-210	975	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000822212.1	LINC00620-207	821	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000822213.1	LINC00620-208	753	No protein	-	lncRNA	-	-
ENST00000822209.1	LINC00620-204	666	No protein	-	lncRNA	-	-
ENST00000822211.1	LINC00620-206	664	No protein	-	lncRNA	-	-
ENST00000822210.1	LINC00620-205	645	No protein	-	lncRNA	-	-
ENST00000822218.1	LINC00620-213	602	No protein	-	lncRNA	-	-
ENST00000822223.1	LINC00620-218	598	No protein	-	lncRNA	-	-
ENST00000822224.1	LINC00620-219	566	No protein	-	lncRNA	-	-
ENST00000822219.1	LINC00620-214	562	No protein	-	lncRNA	-	-
ENST00000822214.1	LINC00620-209	552	No protein	-	lncRNA	-	-
ENST00000822217.1	LINC00620-212	501	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000822216.1	LINC00620-211	447	No protein	-	lncRNA	-	-
ENST00000822220.1	LINC00620-215	433	No protein	-	lncRNA	-	-
ENST00000822222.1	LINC00620-217	378	No protein	-	lncRNA	-	-
ENST00000822221.1	LINC00620-216	353	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 1,008 bps,

Version

ENST00000665476.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000665476.1 LINC00620-203

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000665476.1 LINC00620-203

Summary

About Us

Get help

Our sister sites

Follow us