Transcript: ENST00000665076.1 FIRRE-216

Description

firre intergenic repeating RNA element [Source:HGNC Symbol;Acc:HGNC:49627]

Gene Synonyms

LINC01200

Location

Chromosome X: 131,691,523-131,830,620 reverse strand.

About this transcript

This transcript has 13 exons and maps to 418 oligo probes.

Gene

This transcript is a product of gene ENSG00000213468.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000650184.2	FIRRE-207	1946	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENST00000649541.1	FIRRE-206	5506	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000663405.1	FIRRE-215	4468	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000427391.2	FIRRE-201	2926	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000665076.1	FIRRE-216	2812	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654978.1	FIRRE-209	2532	No protein	-	lncRNA	-	-
ENST00000637577.2	FIRRE-202	2478	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000647966.1	FIRRE-203	2345	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000657242.2	FIRRE-211	2285	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000842162.1	FIRRE-226	2240	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000648028.2	FIRRE-204	2128	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000842167.1	FIRRE-231	2084	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000649391.1	FIRRE-205	2050	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000842156.1	FIRRE-220	1879	No protein	-	lncRNA	-	-
ENST00000842157.1	FIRRE-221	1872	No protein	-	lncRNA	-	-
ENST00000842154.1	FIRRE-218	1732	No protein	-	lncRNA	-	-
ENST00000842159.1	FIRRE-223	1567	No protein	-	lncRNA	-	-
ENST00000842169.1	FIRRE-233	1358	No protein	-	lncRNA	-	-
ENST00000662867.1	FIRRE-214	1302	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668308.2	FIRRE-217	1241	No protein	-	lncRNA	-	-
ENST00000842166.1	FIRRE-230	1240	No protein	-	lncRNA	-	-
ENST00000658060.2	FIRRE-212	1121	No protein	-	lncRNA	-	-
ENST00000842158.1	FIRRE-222	1054	No protein	-	lncRNA	-	-
ENST00000842163.1	FIRRE-227	1019	No protein	-	lncRNA	-	-
ENST00000842155.1	FIRRE-219	1002	No protein	-	lncRNA	-	-
ENST00000653136.3	FIRRE-208	975	No protein	-	lncRNA	-	-
ENST00000842170.1	FIRRE-234	974	No protein	-	lncRNA	-	-
ENST00000658376.2	FIRRE-213	933	No protein	-	lncRNA	-	-
ENST00000842165.1	FIRRE-229	790	No protein	-	lncRNA	-	-
ENST00000842160.1	FIRRE-224	781	No protein	-	lncRNA	-	-
ENST00000656586.1	FIRRE-210	753	No protein	-	lncRNA	-	-
ENST00000842161.1	FIRRE-225	618	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000842164.1	FIRRE-228	611	No protein	-	lncRNA	-	-
ENST00000842168.1	FIRRE-232	563	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 13, Coding exons: 0, Transcript length: 2,812 bps,

Version

ENST00000665076.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000665076.1 FIRRE-216

Summary

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Transcript: ENST00000665076.1 FIRRE-216

Summary

About Us

Get help

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