Transcript: ENST00000664709.1 LINC02466-208

Description

long intergenic non-protein coding RNA 2466 [Source:HGNC Symbol;Acc:HGNC:53405]

Location

Chromosome 4: 129,724,173-129,771,515 reverse strand.

About this transcript

This transcript has 5 exons and maps to 139 oligo probes.

Gene

This transcript is a product of gene ENSG00000246876.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000653915.1	LINC02466-204	980	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000663942.1	LINC02466-207	2278	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000500092.7	LINC02466-201	1966	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000667892.1	LINC02466-210	1938	No protein	-	lncRNA	-	-
ENST00000660846.1	LINC02466-206	1477	No protein	-	lncRNA	-	-
ENST00000664709.1	LINC02466-208	981	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000830556.1	LINC02466-221	928	No protein	-	lncRNA	-	-
ENST00000654715.1	LINC02466-205	925	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000830548.1	LINC02466-213	898	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000653323.1	LINC02466-203	783	No protein	-	lncRNA	-	-
ENST00000830554.1	LINC02466-219	750	No protein	-	lncRNA	-	-
ENST00000830552.1	LINC02466-217	710	No protein	-	lncRNA	-	-
ENST00000830553.1	LINC02466-218	698	No protein	-	lncRNA	-	-
ENST00000669328.2	LINC02466-211	683	No protein	-	lncRNA	-	-
ENST00000509105.1	LINC02466-202	653	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000665329.1	LINC02466-209	647	No protein	-	lncRNA	-	-
ENST00000830557.1	LINC02466-222	628	No protein	-	lncRNA	-	-
ENST00000670512.1	LINC02466-212	625	No protein	-	lncRNA	-	-
ENST00000830549.1	LINC02466-214	572	No protein	-	lncRNA	-	-
ENST00000830551.1	LINC02466-216	521	No protein	-	lncRNA	-	-
ENST00000830550.1	LINC02466-215	496	No protein	-	lncRNA	-	-
ENST00000830559.1	LINC02466-224	486	No protein	-	lncRNA	-	-
ENST00000830555.1	LINC02466-220	444	No protein	-	lncRNA	-	-
ENST00000830560.1	LINC02466-225	441	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000830558.1	LINC02466-223	406	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 981 bps,

Version

ENST00000664709.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000664709.1 LINC02466-208

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Transcript: ENST00000664709.1 LINC02466-208

Summary

About Us

Get help

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