Transcript: ENST00000664480.1 LINC01643-219

Description

long intergenic non-protein coding RNA 1643 [Source:HGNC Symbol;Acc:HGNC:52430]

Location

Chromosome 22: 34,017,426-34,218,794 forward strand.

About this transcript

This transcript has 11 exons, is associated with 84845 variant alleles and maps to 176 oligo probes.

Gene

This transcript is a product of gene ENSG00000236052.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000664480.1	LINC01643-219	1342	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000665701.1	LINC01643-223	1618	No protein	-	lncRNA	-	-
ENST00000665458.1	LINC01643-222	1475	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654009.1	LINC01643-204	1424	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655455.1	LINC01643-205	1360	No protein	-	lncRNA	-	-
ENST00000668901.1	LINC01643-226	1343	No protein	-	lncRNA	-	-
ENST00000655904.1	LINC01643-206	1330	No protein	-	lncRNA	-	-
ENST00000668175.1	LINC01643-225	1323	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658589.1	LINC01643-212	1278	No protein	-	lncRNA	-	-
ENST00000661800.1	LINC01643-215	1268	No protein	-	lncRNA	-	-
ENST00000670742.1	LINC01643-230	1252	No protein	-	lncRNA	-	-
ENST00000667570.1	LINC01643-224	1248	No protein	-	lncRNA	-	-
ENST00000656434.1	LINC01643-208	1201	No protein	-	lncRNA	-	-
ENST00000661903.1	LINC01643-216	1195	No protein	-	lncRNA	-	-
ENST00000664743.1	LINC01643-220	1178	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000669802.1	LINC01643-228	1158	No protein	-	lncRNA	-	-
ENST00000658055.1	LINC01643-211	1130	No protein	-	lncRNA	-	-
ENST00000669488.1	LINC01643-227	1130	No protein	-	lncRNA	-	-
ENST00000658014.1	LINC01643-210	1060	No protein	-	lncRNA	-	-
ENST00000659067.1	LINC01643-214	1047	No protein	-	lncRNA	-	-
ENST00000652942.1	LINC01643-202	1045	No protein	-	lncRNA	-	-
ENST00000665392.1	LINC01643-221	1021	No protein	-	lncRNA	-	-
ENST00000656244.1	LINC01643-207	1007	No protein	-	lncRNA	-	-
ENST00000671554.1	LINC01643-231	962	No protein	-	lncRNA	-	-
ENST00000657115.1	LINC01643-209	959	No protein	-	lncRNA	-	-
ENST00000663820.1	LINC01643-217	955	No protein	-	lncRNA	-	-
ENST00000664028.1	LINC01643-218	946	No protein	-	lncRNA	-	-
ENST00000670329.1	LINC01643-229	860	No protein	-	lncRNA	-	-
ENST00000658699.1	LINC01643-213	845	No protein	-	lncRNA	-	-
ENST00000412218.1	LINC01643-201	757	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000653369.1	LINC01643-203	720	No protein	-	lncRNA	-	-
ENST00000803096.1	LINC01643-232	462	No protein	-	lncRNA	-	-
ENST00000803099.1	LINC01643-235	431	No protein	-	lncRNA	-	-
ENST00000803098.1	LINC01643-234	400	No protein	-	lncRNA	-	-
ENST00000803097.1	LINC01643-233	353	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 11, Coding exons: 0, Transcript length: 1,342 bps,

Version

ENST00000664480.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000664480.1 LINC01643-219

Summary

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Transcript: ENST00000664480.1 LINC01643-219

Summary

About Us

Get help

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