Transcript: ENST00000664006.1 SLC12A2-DT-226

Description

SLC12A2 divergent transcript [Source:HGNC Symbol;Acc:HGNC:49565]

Gene Synonyms

FLJ33630, LINC01184

Location

Chromosome 5: 128,057,014-128,083,097 reverse strand.

About this transcript

This transcript has 4 exons and maps to 216 oligo probes.

Gene

This transcript is a product of gene ENSG00000245937.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000499346.8	SLC12A2-DT-201	2658	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000656154.1	SLC12A2-DT-214	5794	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000663976.1	SLC12A2-DT-225	4466	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000663841.1	SLC12A2-DT-224	4355	No protein	-	lncRNA	-	-
ENST00000655628.1	SLC12A2-DT-213	4319	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654888.1	SLC12A2-DT-212	4027	No protein	-	lncRNA	-	-
ENST00000664006.1	SLC12A2-DT-226	4007	No protein	-	lncRNA	-	-
ENST00000656563.1	SLC12A2-DT-215	3866	No protein	-	lncRNA	-	-
ENST00000668567.2	SLC12A2-DT-230	3395	No protein	-	lncRNA	-	-
ENST00000501702.8	SLC12A2-DT-204	3297	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000657683.1	SLC12A2-DT-217	3258	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000665302.1	SLC12A2-DT-227	3036	No protein	-	lncRNA	-	-
ENST00000668265.1	SLC12A2-DT-229	3016	No protein	-	lncRNA	-	-
ENST00000659415.1	SLC12A2-DT-218	2858	No protein	-	lncRNA	-	-
ENST00000514409.7	SLC12A2-DT-208	2335	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000661296.1	SLC12A2-DT-222	1907	No protein	-	lncRNA	-	-
ENST00000826861.1	SLC12A2-DT-239	1714	No protein	-	lncRNA	-	-
ENST00000501652.6	SLC12A2-DT-203	1705	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000661552.2	SLC12A2-DT-223	1641	No protein	-	lncRNA	-	-
ENST00000665599.1	SLC12A2-DT-228	1597	No protein	-	lncRNA	-	-
ENST00000826859.1	SLC12A2-DT-237	1568	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000657475.3	SLC12A2-DT-216	1564	No protein	-	lncRNA	-	-
ENST00000687795.2	SLC12A2-DT-231	1529	No protein	-	lncRNA	-	-
ENST00000826863.1	SLC12A2-DT-241	1516	No protein	-	lncRNA	-	-
ENST00000826866.1	SLC12A2-DT-244	1452	No protein	-	lncRNA	-	-
ENST00000702468.2	SLC12A2-DT-234	1435	No protein	-	lncRNA	-	-
ENST00000606251.2	SLC12A2-DT-210	1321	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000689029.2	SLC12A2-DT-232	1307	No protein	-	lncRNA	-	-
ENST00000660408.1	SLC12A2-DT-221	1295	No protein	-	lncRNA	-	-
ENST00000826860.1	SLC12A2-DT-238	1137	No protein	-	lncRNA	-	-
ENST00000501173.7	SLC12A2-DT-202	1043	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000508878.5	SLC12A2-DT-206	968	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000826864.1	SLC12A2-DT-242	934	No protein	-	lncRNA	-	-
ENST00000826865.1	SLC12A2-DT-243	859	No protein	-	lncRNA	-	-
ENST00000826871.1	SLC12A2-DT-249	853	No protein	-	lncRNA	-	-
ENST00000826869.1	SLC12A2-DT-247	799	No protein	-	lncRNA	-	-
ENST00000660180.1	SLC12A2-DT-220	761	No protein	-	lncRNA	-	-
ENST00000826858.1	SLC12A2-DT-236	742	No protein	-	lncRNA	-	-
ENST00000826862.1	SLC12A2-DT-240	666	No protein	-	lncRNA	-	-
ENST00000702397.1	SLC12A2-DT-233	665	No protein	-	lncRNA	-	-
ENST00000826872.1	SLC12A2-DT-250	635	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000826874.1	SLC12A2-DT-252	628	No protein	-	lncRNA	-	-
ENST00000659990.1	SLC12A2-DT-219	624	No protein	-	lncRNA	-	-
ENST00000514573.5	SLC12A2-DT-209	609	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000826873.1	SLC12A2-DT-251	596	No protein	-	lncRNA	-	-
ENST00000826867.1	SLC12A2-DT-245	581	No protein	-	lncRNA	-	-
ENST00000826870.1	SLC12A2-DT-248	548	No protein	-	lncRNA	-	-
ENST00000826857.1	SLC12A2-DT-235	510	No protein	-	lncRNA	-	-
ENST00000826868.1	SLC12A2-DT-246	494	No protein	-	lncRNA	-	-
ENST00000508353.5	SLC12A2-DT-205	488	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000512185.1	SLC12A2-DT-207	473	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000606855.1	SLC12A2-DT-211	320	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 4,007 bps,

Version

ENST00000664006.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000664006.1 SLC12A2-DT-226

Summary

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Transcript: ENST00000664006.1 SLC12A2-DT-226

Summary

About Us

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