Transcript: ENST00000663590.2 GLIDR-209

Description

glioblastoma down-regulated RNA [Source:HGNC Symbol;Acc:HGNC:48823]

Gene Synonyms

FAM88A, LINC01172, MGC21881, TCONS_00015562

Location

Chromosome 9: 39,776,516-39,809,723 reverse strand.

About this transcript

This transcript has 3 exons and maps to 412 oligo probes.

Gene

This transcript is a product of gene ENSG00000278175.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000692061.2	GLIDR-234	644	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000665892.3	GLIDR-210	3040	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000660231.3	GLIDR-208	2954	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000638724.3	GLIDR-204	2737	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000618092.4	GLIDR-201	2634	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000839121.1	GLIDR-299	2614	No protein	-	lncRNA	-	-
ENST00000625350.1	GLIDR-202	2588	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000686447.2	GLIDR-220	2429	No protein	-	lncRNA	-	-
ENST00000839084.1	GLIDR-262	2428	No protein	-	lncRNA	-	-
ENST00000663590.2	GLIDR-209	2354	No protein	-	lncRNA	-	-
ENST00000666618.2	GLIDR-211	2324	No protein	-	lncRNA	-	-
ENST00000627065.4	GLIDR-203	2235	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000657066.2	GLIDR-207	2054	No protein	-	lncRNA	-	-
ENST00000689603.3	GLIDR-226	2037	No protein	-	lncRNA	-	-
ENST00000839099.1	GLIDR-277	1878	No protein	-	lncRNA	-	-
ENST00000839089.1	GLIDR-267	1831	No protein	-	lncRNA	-	-
ENST00000839088.1	GLIDR-266	1807	No protein	-	lncRNA	-	-
ENST00000686441.2	GLIDR-219	1788	No protein	-	lncRNA	-	-
ENST00000691877.1	GLIDR-233	1769	No protein	-	lncRNA	-	-
ENST00000685667.3	GLIDR-216	1761	No protein	-	lncRNA	-	-
ENST00000839085.1	GLIDR-263	1751	No protein	-	lncRNA	-	-
ENST00000839086.1	GLIDR-264	1696	No protein	-	lncRNA	-	-
ENST00000701861.2	GLIDR-243	1647	No protein	-	lncRNA	-	-
ENST00000687737.3	GLIDR-222	1596	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000839125.1	GLIDR-303	1569	No protein	-	lncRNA	-	-
ENST00000839087.1	GLIDR-265	1518	No protein	-	lncRNA	-	-
ENST00000839090.1	GLIDR-268	1514	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000839095.1	GLIDR-273	1503	No protein	-	lncRNA	-	-
ENST00000656945.1	GLIDR-206	1502	No protein	-	lncRNA	-	-
ENST00000839100.1	GLIDR-278	1489	No protein	-	lncRNA	-	-
ENST00000839067.1	GLIDR-245	1465	No protein	-	lncRNA	-	-
ENST00000670314.1	GLIDR-214	1397	No protein	-	lncRNA	-	-
ENST00000839068.1	GLIDR-246	1367	No protein	-	lncRNA	-	-
ENST00000839080.1	GLIDR-258	1360	No protein	-	lncRNA	-	-
ENST00000692088.3	GLIDR-235	1340	No protein	-	lncRNA	-	-
ENST00000839101.1	GLIDR-279	1340	No protein	-	lncRNA	-	-
ENST00000685044.2	GLIDR-215	1296	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000686124.2	GLIDR-217	1249	No protein	-	lncRNA	-	-
ENST00000839137.1	GLIDR-315	1245	No protein	-	lncRNA	-	-
ENST00000839081.1	GLIDR-259	1188	No protein	-	lncRNA	-	-
ENST00000701786.2	GLIDR-241	1155	No protein	-	lncRNA	-	-
ENST00000839118.1	GLIDR-296	1153	No protein	-	lncRNA	-	-
ENST00000839106.1	GLIDR-284	1148	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000640674.4	GLIDR-205	1111	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000839109.1	GLIDR-287	1103	No protein	-	lncRNA	-	-
ENST00000691757.2	GLIDR-232	1100	No protein	-	lncRNA	-	-
ENST00000839072.1	GLIDR-250	1099	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000839117.1	GLIDR-295	1079	No protein	-	lncRNA	-	-
ENST00000688435.1	GLIDR-224	1076	No protein	-	lncRNA	-	-
ENST00000701295.2	GLIDR-238	1059	No protein	-	lncRNA	-	-
ENST00000839116.1	GLIDR-294	1055	No protein	-	lncRNA	-	-
ENST00000839069.1	GLIDR-247	1040	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000691529.1	GLIDR-229	1030	No protein	-	lncRNA	-	-
ENST00000701054.2	GLIDR-236	1028	No protein	-	lncRNA	-	-
ENST00000666906.4	GLIDR-212	1018	No protein	-	lncRNA	-	-
ENST00000839074.1	GLIDR-252	1001	No protein	-	lncRNA	-	-
ENST00000839129.1	GLIDR-307	1000	No protein	-	lncRNA	-	-
ENST00000839070.1	GLIDR-248	997	No protein	-	lncRNA	-	-
ENST00000686915.2	GLIDR-221	995	No protein	-	lncRNA	-	-
ENST00000689331.1	GLIDR-225	989	No protein	-	lncRNA	-	-
ENST00000689933.2	GLIDR-228	982	No protein	-	lncRNA	-	-
ENST00000839111.1	GLIDR-289	981	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000839108.1	GLIDR-286	975	No protein	-	lncRNA	-	-
ENST00000839123.1	GLIDR-301	975	No protein	-	lncRNA	-	-
ENST00000839071.1	GLIDR-249	963	No protein	-	lncRNA	-	-
ENST00000701143.1	GLIDR-237	961	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000701871.2	GLIDR-244	955	No protein	-	lncRNA	-	-
ENST00000686377.2	GLIDR-218	936	No protein	-	lncRNA	-	-
ENST00000839104.1	GLIDR-282	912	No protein	-	lncRNA	-	-
ENST00000667968.3	GLIDR-213	910	No protein	-	lncRNA	-	-
ENST00000701685.1	GLIDR-239	906	No protein	-	lncRNA	-	-
ENST00000839075.1	GLIDR-253	901	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000839092.1	GLIDR-270	889	No protein	-	lncRNA	-	-
ENST00000689701.3	GLIDR-227	883	No protein	-	lncRNA	-	-
ENST00000839119.1	GLIDR-297	882	No protein	-	lncRNA	-	-
ENST00000839103.1	GLIDR-281	878	No protein	-	lncRNA	-	-
ENST00000839105.1	GLIDR-283	876	No protein	-	lncRNA	-	-
ENST00000839132.1	GLIDR-310	869	No protein	-	lncRNA	-	-
ENST00000839079.1	GLIDR-257	866	No protein	-	lncRNA	-	-
ENST00000839134.1	GLIDR-312	862	No protein	-	lncRNA	-	-
ENST00000701809.2	GLIDR-242	861	No protein	-	lncRNA	-	-
ENST00000839082.1	GLIDR-260	854	No protein	-	lncRNA	-	-
ENST00000839130.1	GLIDR-308	844	No protein	-	lncRNA	-	-
ENST00000839131.1	GLIDR-309	843	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000839073.1	GLIDR-251	820	No protein	-	lncRNA	-	-
ENST00000691680.1	GLIDR-231	809	No protein	-	lncRNA	-	-
ENST00000839110.1	GLIDR-288	808	No protein	-	lncRNA	-	-
ENST00000839133.1	GLIDR-311	803	No protein	-	lncRNA	-	-
ENST00000839094.1	GLIDR-272	799	No protein	-	lncRNA	-	-
ENST00000839102.1	GLIDR-280	786	No protein	-	lncRNA	-	-
ENST00000839076.1	GLIDR-254	776	No protein	-	lncRNA	-	-
ENST00000687919.2	GLIDR-223	772	No protein	-	lncRNA	-	-
ENST00000839078.1	GLIDR-256	764	No protein	-	lncRNA	-	-
ENST00000839083.1	GLIDR-261	764	No protein	-	lncRNA	-	-
ENST00000839107.1	GLIDR-285	763	No protein	-	lncRNA	-	-
ENST00000839077.1	GLIDR-255	758	No protein	-	lncRNA	-	-
ENST00000839097.1	GLIDR-275	721	No protein	-	lncRNA	-	-
ENST00000839091.1	GLIDR-269	712	No protein	-	lncRNA	-	-
ENST00000691672.1	GLIDR-230	711	No protein	-	lncRNA	-	-
ENST00000839113.1	GLIDR-291	694	No protein	-	lncRNA	-	-
ENST00000839138.1	GLIDR-316	688	No protein	-	lncRNA	-	-
ENST00000839122.1	GLIDR-300	678	No protein	-	lncRNA	-	-
ENST00000839139.1	GLIDR-317	678	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000839098.1	GLIDR-276	673	No protein	-	lncRNA	-	-
ENST00000839120.1	GLIDR-298	664	No protein	-	lncRNA	-	-
ENST00000839093.1	GLIDR-271	633	No protein	-	lncRNA	-	-
ENST00000839124.1	GLIDR-302	621	No protein	-	lncRNA	-	-
ENST00000839143.1	GLIDR-321	621	No protein	-	lncRNA	-	-
ENST00000839141.1	GLIDR-319	610	No protein	-	lncRNA	-	-
ENST00000839142.1	GLIDR-320	610	No protein	-	lncRNA	-	-
ENST00000839112.1	GLIDR-290	598	No protein	-	lncRNA	-	-
ENST00000839115.1	GLIDR-293	581	No protein	-	lncRNA	-	-
ENST00000839127.1	GLIDR-305	555	No protein	-	lncRNA	-	-
ENST00000839135.1	GLIDR-313	550	No protein	-	lncRNA	-	-
ENST00000701723.1	GLIDR-240	542	No protein	-	lncRNA	-	-
ENST00000839114.1	GLIDR-292	532	No protein	-	lncRNA	-	-
ENST00000839144.1	GLIDR-322	513	No protein	-	lncRNA	-	-
ENST00000839128.1	GLIDR-306	506	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000839136.1	GLIDR-314	485	No protein	-	lncRNA	-	-
ENST00000839140.1	GLIDR-318	484	No protein	-	lncRNA	-	-
ENST00000839096.1	GLIDR-274	473	No protein	-	lncRNA	-	-
ENST00000839126.1	GLIDR-304	468	No protein	-	lncRNA	-	-
ENST00000839145.1	GLIDR-323	410	No protein	-	lncRNA	-	-
ENST00000839146.1	GLIDR-324	410	No protein	-	lncRNA	-	-
ENST00000839147.1	GLIDR-325	363	No protein	-	lncRNA	-	-
ENST00000839149.1	GLIDR-327	361	No protein	-	lncRNA	-	-
ENST00000839148.1	GLIDR-326	317	No protein	-	lncRNA	-	-
ENST00000839150.1	GLIDR-328	303	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 2,354 bps,

Version

ENST00000663590.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000663590.2 GLIDR-209

Summary

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Transcript: ENST00000663590.2 GLIDR-209

Summary

About Us

Get help

Our sister sites

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