Transcript: ENST00000663320.1 LINC02401-208

Description

long intergenic non-protein coding RNA 2401 [Source:HGNC Symbol;Acc:HGNC:53328]

Location

Chromosome 12: 103,547,863-103,558,650 forward strand.

About this transcript

This transcript has 6 exons and maps to 196 oligo probes.

Gene

This transcript is a product of gene ENSG00000257762.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000666598.1	LINC02401-211	1265	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000550185.5	LINC02401-201	3059	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000664607.1	LINC02401-209	1996	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654623.1	LINC02401-203	1294	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000666854.1	LINC02401-212	1118	No protein	-	lncRNA	-	-
ENST00000664661.1	LINC02401-210	1107	No protein	-	lncRNA	-	-
ENST00000658835.1	LINC02401-205	932	No protein	-	lncRNA	-	-
ENST00000661990.1	LINC02401-207	929	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000667724.1	LINC02401-214	883	No protein	-	lncRNA	-	-
ENST00000663320.1	LINC02401-208	817	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000669702.1	LINC02401-215	757	No protein	-	lncRNA	-	-
ENST00000667519.1	LINC02401-213	753	No protein	-	lncRNA	-	-
ENST00000551174.1	LINC02401-202	713	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000661201.2	LINC02401-206	698	No protein	-	lncRNA	-	-
ENST00000657489.1	LINC02401-204	577	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 817 bps,

Version

ENST00000663320.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000663320.1 LINC02401-208

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Transcript: ENST00000663320.1 LINC02401-208

Summary

About Us

Get help

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