Transcript: ENST00000663252.1 LINC01471-231

Description

long intergenic non-protein coding RNA 1471 [Source:HGNC Symbol;Acc:HGNC:51106]

Location

Chromosome 3: 127,524,203-127,536,901 reverse strand.

About this transcript

This transcript has 5 exons and maps to 145 oligo probes.

Gene

This transcript is a product of gene ENSG00000239921.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000656238.1	LINC01471-214	1681	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000461398.3	LINC01471-201	3079	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000666461.1	LINC01471-237	1912	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000673823.1	LINC01471-243	1790	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000662405.1	LINC01471-229	1772	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655862.1	LINC01471-211	1735	No protein	-	lncRNA	-	-
ENST00000660384.1	LINC01471-224	1727	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000665475.1	LINC01471-235	1715	No protein	-	lncRNA	-	-
ENST00000720912.1	LINC01471-249	1670	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000667598.1	LINC01471-239	1637	No protein	-	lncRNA	-	-
ENST00000663252.1	LINC01471-231	1593	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655927.1	LINC01471-212	1588	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655132.1	LINC01471-210	1517	No protein	-	lncRNA	-	-
ENST00000669420.1	LINC01471-242	1503	No protein	-	lncRNA	-	-
ENST00000660032.1	LINC01471-222	1487	No protein	-	lncRNA	-	-
ENST00000657746.1	LINC01471-217	1484	No protein	-	lncRNA	-	-
ENST00000660160.1	LINC01471-223	1469	No protein	-	lncRNA	-	-
ENST00000720907.1	LINC01471-244	1449	No protein	-	lncRNA	-	-
ENST00000653663.1	LINC01471-207	1441	No protein	-	lncRNA	-	-
ENST00000656000.1	LINC01471-213	1437	No protein	-	lncRNA	-	-
ENST00000661372.1	LINC01471-227	1430	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658009.1	LINC01471-218	1396	No protein	-	lncRNA	-	-
ENST00000720914.1	LINC01471-251	1380	No protein	-	lncRNA	-	-
ENST00000664674.1	LINC01471-234	1379	No protein	-	lncRNA	-	-
ENST00000668773.1	LINC01471-241	1375	No protein	-	lncRNA	-	-
ENST00000666120.1	LINC01471-236	1366	No protein	-	lncRNA	-	-
ENST00000655078.1	LINC01471-209	1333	No protein	-	lncRNA	-	-
ENST00000656310.1	LINC01471-215	1304	No protein	-	lncRNA	-	-
ENST00000657345.1	LINC01471-216	1303	No protein	-	lncRNA	-	-
ENST00000661192.1	LINC01471-226	1300	No protein	-	lncRNA	-	-
ENST00000659207.1	LINC01471-221	1297	No protein	-	lncRNA	-	-
ENST00000664267.1	LINC01471-233	1270	No protein	-	lncRNA	-	-
ENST00000658380.1	LINC01471-220	1270	No protein	-	lncRNA	-	-
ENST00000667355.1	LINC01471-238	1249	No protein	-	lncRNA	-	-
ENST00000634643.1	LINC01471-202	1228	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000658306.1	LINC01471-219	1162	No protein	-	lncRNA	-	-
ENST00000662765.1	LINC01471-230	1152	No protein	-	lncRNA	-	-
ENST00000720908.1	LINC01471-245	1047	No protein	-	lncRNA	-	-
ENST00000653243.1	LINC01471-206	1030	No protein	-	lncRNA	-	-
ENST00000661801.1	LINC01471-228	1017	No protein	-	lncRNA	-	-
ENST00000634855.2	LINC01471-204	1005	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000661186.2	LINC01471-225	970	No protein	-	lncRNA	-	-
ENST00000634941.2	LINC01471-205	955	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000667958.1	LINC01471-240	952	No protein	-	lncRNA	-	-
ENST00000663921.1	LINC01471-232	926	No protein	-	lncRNA	-	-
ENST00000720909.1	LINC01471-246	889	No protein	-	lncRNA	-	-
ENST00000720913.1	LINC01471-250	879	No protein	-	lncRNA	-	-
ENST00000654267.1	LINC01471-208	731	No protein	-	lncRNA	-	-
ENST00000720910.1	LINC01471-247	715	No protein	-	lncRNA	-	-
ENST00000720911.1	LINC01471-248	632	No protein	-	lncRNA	-	-
ENST00000634757.1	LINC01471-203	228	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,593 bps,

Version

ENST00000663252.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000663252.1 LINC01471-231

Summary

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Transcript: ENST00000663252.1 LINC01471-231

Summary

About Us

Get help

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