Transcript: ENST00000663030.1 LINC00499-219

Description

long intergenic non-protein coding RNA 499 [Source:HGNC Symbol;Acc:HGNC:43436]

Gene Synonyms

LINC00500

Location

Chromosome 4: 138,309,795-138,615,090 forward strand.

About this transcript

This transcript has 5 exons and maps to 196 oligo probes.

Gene

This transcript is a product of gene ENSG00000251372.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000663528.1	LINC00499-220	1921	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661748.1	LINC00499-214	5904	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000665940.1	LINC00499-222	3942	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000660826.1	LINC00499-213	3499	No protein	-	lncRNA	-	-
ENST00000669857.1	LINC00499-224	2233	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000662404.1	LINC00499-217	1984	No protein	-	lncRNA	-	-
ENST00000701560.1	LINC00499-228	1688	No protein	-	lncRNA	-	-
ENST00000653577.1	LINC00499-206	1677	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659710.1	LINC00499-212	1589	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000662169.2	LINC00499-215	1551	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000715557.2	LINC00499-232	1479	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000664556.1	LINC00499-221	1424	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000671213.1	LINC00499-225	1423	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658842.1	LINC00499-211	1411	No protein	-	lncRNA	-	-
ENST00000515282.6	LINC00499-204	1235	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000715556.1	LINC00499-231	1168	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000662941.1	LINC00499-218	1160	No protein	-	lncRNA	-	-
ENST00000701935.1	LINC00499-230	1138	No protein	-	lncRNA	-	-
ENST00000655654.1	LINC00499-208	1133	No protein	-	lncRNA	-	-
ENST00000750977.1	LINC00499-249	1111	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000750965.1	LINC00499-237	1056	No protein	-	lncRNA	-	-
ENST00000750966.1	LINC00499-238	1052	No protein	-	lncRNA	-	-
ENST00000750963.1	LINC00499-235	1026	No protein	-	lncRNA	-	-
ENST00000750967.1	LINC00499-239	1025	No protein	-	lncRNA	-	-
ENST00000701767.1	LINC00499-229	1022	No protein	-	lncRNA	-	-
ENST00000750969.1	LINC00499-241	1008	No protein	-	lncRNA	-	-
ENST00000750964.1	LINC00499-236	961	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000667838.1	LINC00499-223	948	No protein	-	lncRNA	-	-
ENST00000750971.1	LINC00499-243	941	No protein	-	lncRNA	-	-
ENST00000700960.1	LINC00499-226	911	No protein	-	lncRNA	-	-
ENST00000750973.1	LINC00499-245	910	No protein	-	lncRNA	-	-
ENST00000663030.1	LINC00499-219	897	No protein	-	lncRNA	-	-
ENST00000662372.2	LINC00499-216	890	No protein	-	lncRNA	-	-
ENST00000750978.1	LINC00499-250	885	No protein	-	lncRNA	-	-
ENST00000750972.1	LINC00499-244	855	No protein	-	lncRNA	-	-
ENST00000656561.1	LINC00499-209	836	No protein	-	lncRNA	-	-
ENST00000701329.1	LINC00499-227	835	No protein	-	lncRNA	-	-
ENST00000653944.2	LINC00499-207	828	No protein	-	lncRNA	-	-
ENST00000750985.1	LINC00499-257	819	No protein	-	lncRNA	-	-
ENST00000750975.1	LINC00499-247	786	No protein	-	lncRNA	-	-
ENST00000750968.1	LINC00499-240	769	No protein	-	lncRNA	-	-
ENST00000750962.1	LINC00499-234	766	No protein	-	lncRNA	-	-
ENST00000750970.1	LINC00499-242	754	No protein	-	lncRNA	-	-
ENST00000750983.1	LINC00499-255	697	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000750974.1	LINC00499-246	682	No protein	-	lncRNA	-	-
ENST00000750984.1	LINC00499-256	667	No protein	-	lncRNA	-	-
ENST00000658827.1	LINC00499-210	659	No protein	-	lncRNA	-	-
ENST00000750976.1	LINC00499-248	658	No protein	-	lncRNA	-	-
ENST00000750986.1	LINC00499-258	652	No protein	-	lncRNA	-	-
ENST00000750982.1	LINC00499-254	651	No protein	-	lncRNA	-	-
ENST00000750981.1	LINC00499-253	611	No protein	-	lncRNA	-	-
ENST00000750980.1	LINC00499-252	607	No protein	-	lncRNA	-	-
ENST00000750961.1	LINC00499-233	593	No protein	-	lncRNA	-	-
ENST00000510736.1	LINC00499-203	587	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000502757.1	LINC00499-201	567	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000507145.1	LINC00499-202	540	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000515860.1	LINC00499-205	539	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000815123.1	LINC00499-259	495	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000750979.1	LINC00499-251	461	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 897 bps,

Version

ENST00000663030.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000663030.1 LINC00499-219

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Transcript: ENST00000663030.1 LINC00499-219

Summary

About Us

Get help

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