Transcript: ENST00000662170.2 SPATA42-203

Description

spermatogenesis associated 42 [Source:HGNC Symbol;Acc:HGNC:41198]

Gene Synonyms

AKNAD1-AS1, SRG7

Location

Chromosome 1: 108,857,160-108,858,529 forward strand.

About this transcript

This transcript has 2 exons, is associated with 536 variant alleles and maps to 262 oligo probes.

Gene

This transcript is a product of gene ENSG00000203897.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000662170.2	SPATA42-203	714	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000369989.3	SPATA42-201	592	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000755133.1	SPATA42-204	574	No protein	-	lncRNA	-	-
ENST00000417241.1	SPATA42-202	441	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000755134.1	SPATA42-205	383	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 714 bps,

Version

ENST00000662170.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000662170.2 SPATA42-203

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Transcript: ENST00000662170.2 SPATA42-203

Summary

About Us

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