Transcript: ENST00000661312.1 CRNDE-221

Description

colorectal neoplasia differentially expressed [Source:HGNC Symbol;Acc:HGNC:37078]

Gene Synonyms

CRNDEP, LINC00180, LOC643911

Location

Chromosome 16: 54,918,917-54,927,726 reverse strand.

About this transcript

This transcript has 5 exons and maps to 332 oligo probes.

Gene

This transcript is a product of gene ENSG00000245694.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000750651.1	CRNDE-234	621	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000717492.1	CRNDE-232	19697	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000557792.2	CRNDE-203	6325	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000657142.1	CRNDE-217	6132	No protein	-	lncRNA	-	-
ENST00000558952.2	CRNDE-205	4724	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000668556.1	CRNDE-224	3027	No protein	-	lncRNA	-	-
ENST00000613942.2	CRNDE-212	2601	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000750713.1	CRNDE-296	2279	No protein	-	lncRNA	-	-
ENST00000660344.2	CRNDE-220	2244	No protein	-	lncRNA	-	-
ENST00000750671.1	CRNDE-254	2196	No protein	-	lncRNA	-	-
ENST00000689582.2	CRNDE-228	2158	No protein	-	lncRNA	-	-
ENST00000750686.1	CRNDE-269	2114	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000750680.1	CRNDE-263	2100	No protein	-	lncRNA	-	-
ENST00000658082.1	CRNDE-218	2042	No protein	-	lncRNA	-	-
ENST00000689375.1	CRNDE-227	2023	No protein	-	lncRNA	-	-
ENST00000701575.1	CRNDE-230	1980	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000750682.1	CRNDE-265	1959	No protein	-	lncRNA	-	-
ENST00000560029.6	CRNDE-208	1932	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000750688.1	CRNDE-271	1911	No protein	-	lncRNA	-	-
ENST00000559598.7	CRNDE-207	1866	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000717493.1	CRNDE-233	1766	No protein	-	lncRNA	-	-
ENST00000750714.1	CRNDE-297	1673	No protein	-	lncRNA	-	-
ENST00000502066.8	CRNDE-202	1611	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000501177.10	CRNDE-201	1437	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000688921.3	CRNDE-226	1388	No protein	-	lncRNA	-	-
ENST00000750716.1	CRNDE-299	1377	No protein	-	lncRNA	-	-
ENST00000661312.1	CRNDE-221	1348	No protein	-	lncRNA	-	-
ENST00000750703.1	CRNDE-286	1296	No protein	-	lncRNA	-	-
ENST00000750701.1	CRNDE-284	1292	No protein	-	lncRNA	-	-
ENST00000750728.1	CRNDE-311	1233	No protein	-	lncRNA	-	-
ENST00000750695.1	CRNDE-278	1221	No protein	-	lncRNA	-	-
ENST00000655114.2	CRNDE-216	1145	No protein	-	lncRNA	-	-
ENST00000686100.2	CRNDE-225	1094	No protein	-	lncRNA	-	-
ENST00000635991.2	CRNDE-213	1090	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000750722.1	CRNDE-305	1060	No protein	-	lncRNA	-	-
ENST00000750677.1	CRNDE-260	1059	No protein	-	lncRNA	-	-
ENST00000750704.1	CRNDE-287	1048	No protein	-	lncRNA	-	-
ENST00000750727.1	CRNDE-310	1001	No protein	-	lncRNA	-	-
ENST00000750721.1	CRNDE-304	926	No protein	-	lncRNA	-	-
ENST00000750690.1	CRNDE-273	925	No protein	-	lncRNA	-	-
ENST00000661493.1	CRNDE-222	919	No protein	-	lncRNA	-	-
ENST00000750720.1	CRNDE-303	911	No protein	-	lncRNA	-	-
ENST00000750711.1	CRNDE-294	888	No protein	-	lncRNA	-	-
ENST00000750705.1	CRNDE-288	881	No protein	-	lncRNA	-	-
ENST00000750706.1	CRNDE-289	881	No protein	-	lncRNA	-	-
ENST00000637011.2	CRNDE-214	867	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000750689.1	CRNDE-272	867	No protein	-	lncRNA	-	-
ENST00000750719.1	CRNDE-302	862	No protein	-	lncRNA	-	-
ENST00000750683.1	CRNDE-266	846	No protein	-	lncRNA	-	-
ENST00000750661.1	CRNDE-244	809	No protein	-	lncRNA	-	-
ENST00000750724.1	CRNDE-307	798	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000750710.1	CRNDE-293	788	No protein	-	lncRNA	-	-
ENST00000750670.1	CRNDE-253	787	No protein	-	lncRNA	-	-
ENST00000750707.1	CRNDE-290	778	No protein	-	lncRNA	-	-
ENST00000691307.3	CRNDE-229	769	No protein	-	lncRNA	-	-
ENST00000560208.1	CRNDE-209	735	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000558031.8	CRNDE-204	727	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000560912.7	CRNDE-210	727	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000750678.1	CRNDE-261	719	No protein	-	lncRNA	-	-
ENST00000701876.2	CRNDE-231	713	No protein	-	lncRNA	-	-
ENST00000750697.1	CRNDE-280	709	No protein	-	lncRNA	-	-
ENST00000750725.1	CRNDE-308	703	No protein	-	lncRNA	-	-
ENST00000750698.1	CRNDE-281	702	No protein	-	lncRNA	-	-
ENST00000750667.1	CRNDE-250	701	No protein	-	lncRNA	-	-
ENST00000750709.1	CRNDE-292	701	No protein	-	lncRNA	-	-
ENST00000750676.1	CRNDE-259	693	No protein	-	lncRNA	-	-
ENST00000750702.1	CRNDE-285	689	No protein	-	lncRNA	-	-
ENST00000750673.1	CRNDE-256	680	No protein	-	lncRNA	-	-
ENST00000750693.1	CRNDE-276	675	No protein	-	lncRNA	-	-
ENST00000750692.1	CRNDE-275	673	No protein	-	lncRNA	-	-
ENST00000750669.1	CRNDE-252	671	No protein	-	lncRNA	-	-
ENST00000750708.1	CRNDE-291	671	No protein	-	lncRNA	-	-
ENST00000750672.1	CRNDE-255	653	No protein	-	lncRNA	-	-
ENST00000750658.1	CRNDE-241	651	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000750662.1	CRNDE-245	649	No protein	-	lncRNA	-	-
ENST00000750687.1	CRNDE-270	648	No protein	-	lncRNA	-	-
ENST00000750685.1	CRNDE-268	647	No protein	-	lncRNA	-	-
ENST00000559432.7	CRNDE-206	645	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000750712.1	CRNDE-295	645	No protein	-	lncRNA	-	-
ENST00000750657.1	CRNDE-240	642	No protein	-	lncRNA	-	-
ENST00000750700.1	CRNDE-283	641	No protein	-	lncRNA	-	-
ENST00000750691.1	CRNDE-274	640	No protein	-	lncRNA	-	-
ENST00000667913.2	CRNDE-223	635	No protein	-	lncRNA	-	-
ENST00000750664.1	CRNDE-247	634	No protein	-	lncRNA	-	-
ENST00000750681.1	CRNDE-264	631	No protein	-	lncRNA	-	-
ENST00000750668.1	CRNDE-251	621	No protein	-	lncRNA	-	-
ENST00000750675.1	CRNDE-258	621	No protein	-	lncRNA	-	-
ENST00000750732.1	CRNDE-315	619	No protein	-	lncRNA	-	-
ENST00000654070.2	CRNDE-215	613	No protein	-	lncRNA	-	-
ENST00000750659.1	CRNDE-242	609	No protein	-	lncRNA	-	-
ENST00000750699.1	CRNDE-282	604	No protein	-	lncRNA	-	-
ENST00000750652.1	CRNDE-235	594	No protein	-	lncRNA	-	-
ENST00000750665.1	CRNDE-248	592	No protein	-	lncRNA	-	-
ENST00000750674.1	CRNDE-257	591	No protein	-	lncRNA	-	-
ENST00000750684.1	CRNDE-267	583	No protein	-	lncRNA	-	-
ENST00000750660.1	CRNDE-243	575	No protein	-	lncRNA	-	-
ENST00000750666.1	CRNDE-249	575	No protein	-	lncRNA	-	-
ENST00000750663.1	CRNDE-246	554	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000750679.1	CRNDE-262	554	No protein	-	lncRNA	-	-
ENST00000750726.1	CRNDE-309	544	No protein	-	lncRNA	-	-
ENST00000750656.1	CRNDE-239	528	No protein	-	lncRNA	-	-
ENST00000750730.1	CRNDE-313	522	No protein	-	lncRNA	-	-
ENST00000750717.1	CRNDE-300	503	No protein	-	lncRNA	-	-
ENST00000750696.1	CRNDE-279	496	No protein	-	lncRNA	-	-
ENST00000750723.1	CRNDE-306	493	No protein	-	lncRNA	-	-
ENST00000750654.1	CRNDE-237	467	No protein	-	lncRNA	-	-
ENST00000750731.1	CRNDE-314	467	No protein	-	lncRNA	-	-
ENST00000750715.1	CRNDE-298	462	No protein	-	lncRNA	-	-
ENST00000750729.1	CRNDE-312	451	No protein	-	lncRNA	-	-
ENST00000750694.1	CRNDE-277	449	No protein	-	lncRNA	-	-
ENST00000750733.1	CRNDE-316	432	No protein	-	lncRNA	-	-
ENST00000750718.1	CRNDE-301	430	No protein	-	lncRNA	-	-
ENST00000561591.1	CRNDE-211	420	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000750653.1	CRNDE-236	411	No protein	-	lncRNA	-	-
ENST00000659020.1	CRNDE-219	359	No protein	-	lncRNA	-	-
ENST00000750655.1	CRNDE-238	244	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,348 bps,

Version

ENST00000661312.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000661312.1 CRNDE-221

Summary

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Transcript: ENST00000661312.1 CRNDE-221

Summary

About Us

Get help

Our sister sites

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