Transcript: ENST00000660836.2 JPX-244

Description

JPX transcript, XIST activator [Source:HGNC Symbol;Acc:HGNC:37191]

Gene Synonyms

DCBALD06, ENOX, LINC00183, NCRNA00183

Location

Chromosome X: 73,944,306-74,007,684 forward strand.

About this transcript

This transcript has 4 exons and maps to 345 oligo probes.

Gene

This transcript is a product of gene ENSG00000225470.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000805217.1	JPX-286	1591	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000639185.1	JPX-212	9658	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000654005.1	JPX-219	5531	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000664637.1	JPX-256	5488	No protein	-	lncRNA	-	-
ENST00000657372.1	JPX-232	5467	No protein	-	lncRNA	-	-
ENST00000660856.1	JPX-246	5352	No protein	-	lncRNA	-	-
ENST00000667886.1	JPX-266	5350	No protein	-	lncRNA	-	-
ENST00000657179.1	JPX-231	5113	No protein	-	lncRNA	-	-
ENST00000670408.1	JPX-273	4686	No protein	-	lncRNA	-	-
ENST00000668590.1	JPX-269	4628	No protein	-	lncRNA	-	-
ENST00000655090.2	JPX-224	3960	No protein	-	lncRNA	-	-
ENST00000660836.2	JPX-244	3776	No protein	-	lncRNA	-	-
ENST00000660840.1	JPX-245	3571	No protein	-	lncRNA	-	-
ENST00000669149.2	JPX-270	3483	No protein	-	lncRNA	-	-
ENST00000653479.1	JPX-215	2753	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000698366.1	JPX-285	2492	No protein	-	lncRNA	-	-
ENST00000670506.1	JPX-276	2112	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659254.1	JPX-237	2067	No protein	-	lncRNA	-	-
ENST00000668488.1	JPX-268	1947	No protein	-	lncRNA	-	-
ENST00000414209.6	JPX-201	1910	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000671207.1	JPX-281	1893	No protein	-	lncRNA	-	-
ENST00000670994.1	JPX-279	1852	No protein	-	lncRNA	-	-
ENST00000663027.1	JPX-252	1818	No protein	-	lncRNA	-	-
ENST00000655879.1	JPX-225	1817	No protein	-	lncRNA	-	-
ENST00000657910.1	JPX-234	1746	No protein	-	lncRNA	-	-
ENST00000671336.1	JPX-282	1746	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000665032.1	JPX-257	1744	No protein	-	lncRNA	-	-
ENST00000667057.1	JPX-262	1726	No protein	-	lncRNA	-	-
ENST00000602772.5	JPX-207	1692	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000670685.1	JPX-277	1689	No protein	-	lncRNA	-	-
ENST00000661130.1	JPX-247	1675	No protein	-	lncRNA	-	-
ENST00000671476.1	JPX-283	1624	No protein	-	lncRNA	-	-
ENST00000640437.1	JPX-213	1620	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000658649.1	JPX-235	1561	No protein	-	lncRNA	-	-
ENST00000667937.1	JPX-267	1533	No protein	-	lncRNA	-	-
ENST00000659373.1	JPX-238	1525	No protein	-	lncRNA	-	-
ENST00000662120.1	JPX-249	1492	No protein	-	lncRNA	-	-
ENST00000659849.1	JPX-240	1492	No protein	-	lncRNA	-	-
ENST00000805236.1	JPX-305	1480	No protein	-	lncRNA	-	-
ENST00000664295.1	JPX-254	1469	No protein	-	lncRNA	-	-
ENST00000805218.1	JPX-287	1469	No protein	-	lncRNA	-	-
ENST00000670192.2	JPX-272	1466	No protein	-	lncRNA	-	-
ENST00000805252.1	JPX-321	1454	No protein	-	lncRNA	-	-
ENST00000662239.1	JPX-250	1442	No protein	-	lncRNA	-	-
ENST00000653885.1	JPX-217	1422	No protein	-	lncRNA	-	-
ENST00000670464.1	JPX-274	1395	No protein	-	lncRNA	-	-
ENST00000670805.1	JPX-278	1395	No protein	-	lncRNA	-	-
ENST00000655994.1	JPX-226	1388	No protein	-	lncRNA	-	-
ENST00000654137.1	JPX-220	1377	No protein	-	lncRNA	-	-
ENST00000667645.1	JPX-265	1364	No protein	-	lncRNA	-	-
ENST00000659023.1	JPX-236	1316	No protein	-	lncRNA	-	-
ENST00000660546.1	JPX-243	1292	No protein	-	lncRNA	-	-
ENST00000669168.1	JPX-271	1292	No protein	-	lncRNA	-	-
ENST00000656263.1	JPX-227	1249	No protein	-	lncRNA	-	-
ENST00000665345.1	JPX-258	1244	No protein	-	lncRNA	-	-
ENST00000602938.6	JPX-210	1242	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000805253.1	JPX-322	1234	No protein	-	lncRNA	-	-
ENST00000666059.1	JPX-259	1223	No protein	-	lncRNA	-	-
ENST00000661546.1	JPX-248	1217	No protein	-	lncRNA	-	-
ENST00000670503.1	JPX-275	1216	No protein	-	lncRNA	-	-
ENST00000653808.1	JPX-216	1213	No protein	-	lncRNA	-	-
ENST00000656624.1	JPX-229	1195	No protein	-	lncRNA	-	-
ENST00000602737.6	JPX-206	1166	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000654995.1	JPX-223	1162	No protein	-	lncRNA	-	-
ENST00000805219.1	JPX-288	1146	No protein	-	lncRNA	-	-
ENST00000656509.1	JPX-228	1132	No protein	-	lncRNA	-	-
ENST00000671021.1	JPX-280	1109	No protein	-	lncRNA	-	-
ENST00000659622.1	JPX-239	1100	No protein	-	lncRNA	-	-
ENST00000659852.2	JPX-241	1099	No protein	-	lncRNA	-	-
ENST00000805221.1	JPX-290	1087	No protein	-	lncRNA	-	-
ENST00000666493.2	JPX-261	1015	No protein	-	lncRNA	-	-
ENST00000653069.1	JPX-214	1005	No protein	-	lncRNA	-	-
ENST00000654196.1	JPX-221	999	No protein	-	lncRNA	-	-
ENST00000664328.1	JPX-255	991	No protein	-	lncRNA	-	-
ENST00000805246.1	JPX-315	983	No protein	-	lncRNA	-	-
ENST00000667573.1	JPX-264	962	No protein	-	lncRNA	-	-
ENST00000662543.1	JPX-251	930	No protein	-	lncRNA	-	-
ENST00000660087.2	JPX-242	881	No protein	-	lncRNA	-	-
ENST00000805233.1	JPX-302	873	No protein	-	lncRNA	-	-
ENST00000667294.1	JPX-263	864	No protein	-	lncRNA	-	-
ENST00000671518.1	JPX-284	845	No protein	-	lncRNA	-	-
ENST00000602895.6	JPX-208	843	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000805239.1	JPX-308	836	No protein	-	lncRNA	-	-
ENST00000805228.1	JPX-297	831	No protein	-	lncRNA	-	-
ENST00000805247.1	JPX-316	810	No protein	-	lncRNA	-	-
ENST00000805248.1	JPX-317	797	No protein	-	lncRNA	-	-
ENST00000805231.1	JPX-300	788	No protein	-	lncRNA	-	-
ENST00000602294.6	JPX-204	782	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000805223.1	JPX-292	782	No protein	-	lncRNA	-	-
ENST00000805230.1	JPX-299	778	No protein	-	lncRNA	-	-
ENST00000602546.5	JPX-205	762	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000805229.1	JPX-298	754	No protein	-	lncRNA	-	-
ENST00000602920.6	JPX-209	753	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000653929.1	JPX-218	739	No protein	-	lncRNA	-	-
ENST00000805226.1	JPX-295	732	No protein	-	lncRNA	-	-
ENST00000666318.1	JPX-260	705	No protein	-	lncRNA	-	-
ENST00000805238.1	JPX-307	703	No protein	-	lncRNA	-	-
ENST00000805244.1	JPX-313	680	No protein	-	lncRNA	-	-
ENST00000805220.1	JPX-289	672	No protein	-	lncRNA	-	-
ENST00000805234.1	JPX-303	638	No protein	-	lncRNA	-	-
ENST00000805227.1	JPX-296	634	No protein	-	lncRNA	-	-
ENST00000602985.6	JPX-211	633	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000805242.1	JPX-311	609	No protein	-	lncRNA	-	-
ENST00000805241.1	JPX-310	608	No protein	-	lncRNA	-	-
ENST00000654374.1	JPX-222	606	No protein	-	lncRNA	-	-
ENST00000805232.1	JPX-301	601	No protein	-	lncRNA	-	-
ENST00000805250.1	JPX-319	592	No protein	-	lncRNA	-	-
ENST00000805222.1	JPX-291	587	No protein	-	lncRNA	-	-
ENST00000657638.1	JPX-233	561	No protein	-	lncRNA	-	-
ENST00000805243.1	JPX-312	559	No protein	-	lncRNA	-	-
ENST00000663470.1	JPX-253	554	No protein	-	lncRNA	-	-
ENST00000805240.1	JPX-309	551	No protein	-	lncRNA	-	-
ENST00000805251.1	JPX-320	546	No protein	-	lncRNA	-	-
ENST00000805224.1	JPX-293	539	No protein	-	lncRNA	-	-
ENST00000805225.1	JPX-294	514	No protein	-	lncRNA	-	-
ENST00000805235.1	JPX-304	513	No protein	-	lncRNA	-	-
ENST00000805245.1	JPX-314	513	No protein	-	lncRNA	-	-
ENST00000657096.1	JPX-230	488	No protein	-	lncRNA	-	-
ENST00000453317.1	JPX-203	483	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000415215.1	JPX-202	475	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000805254.1	JPX-323	467	No protein	-	lncRNA	-	-
ENST00000805255.1	JPX-324	464	No protein	-	lncRNA	-	-
ENST00000805249.1	JPX-318	423	No protein	-	lncRNA	-	-
ENST00000805237.1	JPX-306	375	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 3,776 bps,

Version

ENST00000660836.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000660836.2 JPX-244

Summary

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Transcript: ENST00000660836.2 JPX-244

Summary

About Us

Get help

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