Transcript: ENST00000660588.1 LINC02405-213

Description

long intergenic non-protein coding RNA 2405 [Source:HGNC Symbol;Acc:HGNC:53333]

Location

Chromosome 12: 127,059,918-127,060,369 reverse strand.

About this transcript

This transcript has 1 exon and maps to 44 oligo probes.

Gene

This transcript is a product of gene ENSG00000249345.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000755433.1	LINC02405-220	1262	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000670342.4	LINC02405-218	2332	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656788.2	LINC02405-209	2286	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000669743.1	LINC02405-217	2166	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000671361.1	LINC02405-219	2065	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000664581.3	LINC02405-215	1950	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658388.3	LINC02405-211	1542	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000755439.1	LINC02405-226	1495	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658026.2	LINC02405-210	1395	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000651439.2	LINC02405-206	1389	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000512624.6	LINC02405-201	1361	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000656033.1	LINC02405-207	1344	No protein	-	lncRNA	-	-
ENST00000662160.1	LINC02405-214	1260	No protein	-	lncRNA	-	-
ENST00000755438.1	LINC02405-225	1251	No protein	-	lncRNA	-	-
ENST00000665379.1	LINC02405-216	1184	No protein	-	lncRNA	-	-
ENST00000546062.3	LINC02405-205	1181	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000755638.1	LINC02405-231	1122	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000755640.1	LINC02405-233	1114	No protein	-	lncRNA	-	-
ENST00000755434.1	LINC02405-221	1105	No protein	-	lncRNA	-	-
ENST00000755643.1	LINC02405-236	1102	No protein	-	lncRNA	-	-
ENST00000755437.1	LINC02405-224	1042	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000755440.1	LINC02405-227	1015	No protein	-	lncRNA	-	-
ENST00000540244.7	LINC02405-203	968	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000660214.2	LINC02405-212	937	No protein	-	lncRNA	-	-
ENST00000755435.1	LINC02405-222	893	No protein	-	lncRNA	-	-
ENST00000755436.1	LINC02405-223	880	No protein	-	lncRNA	-	-
ENST00000755644.1	LINC02405-237	827	No protein	-	lncRNA	-	-
ENST00000755642.1	LINC02405-235	821	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000755441.1	LINC02405-228	781	No protein	-	lncRNA	-	-
ENST00000755442.1	LINC02405-229	728	No protein	-	lncRNA	-	-
ENST00000656597.1	LINC02405-208	646	No protein	-	lncRNA	-	-
ENST00000755637.1	LINC02405-230	631	No protein	-	lncRNA	-	-
ENST00000755639.1	LINC02405-232	569	No protein	-	lncRNA	-	-
ENST00000755641.1	LINC02405-234	528	No protein	-	lncRNA	-	-
ENST00000541419.1	LINC02405-204	505	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000660588.1	LINC02405-213	452	No protein	-	lncRNA	-	-
ENST00000755646.1	LINC02405-239	446	No protein	-	lncRNA	-	-
ENST00000755645.1	LINC02405-238	411	No protein	-	lncRNA	-	-
ENST00000535022.1	LINC02405-202	242	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 1, Coding exons: 0, Transcript length: 452 bps,

Version

ENST00000660588.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000660588.1 LINC02405-213

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Transcript: ENST00000660588.1 LINC02405-213

Summary

About Us

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