Transcript: ENST00000660519.1 LINC00616-219

Description

long intergenic non-protein coding RNA 616 [Source:HGNC Symbol;Acc:HGNC:44065]

Location

Chromosome 4: 138,026,086-138,130,744 reverse strand.

About this transcript

This transcript has 8 exons and maps to 475 oligo probes.

Gene

This transcript is a product of gene ENSG00000248307.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000731849.1	LINC00616-244	988	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000514600.5	LINC00616-205	2017	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000731866.1	LINC00616-261	1905	No protein	-	lncRNA	-	-
ENST00000654116.1	LINC00616-208	1858	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659104.1	LINC00616-215	1828	No protein	-	lncRNA	-	-
ENST00000670981.1	LINC00616-242	1704	No protein	-	lncRNA	-	-
ENST00000656520.1	LINC00616-211	1628	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000666712.1	LINC00616-235	1617	No protein	-	lncRNA	-	-
ENST00000666434.1	LINC00616-234	1609	No protein	-	lncRNA	-	-
ENST00000668859.1	LINC00616-240	1585	No protein	-	lncRNA	-	-
ENST00000658661.2	LINC00616-214	1503	No protein	-	lncRNA	-	-
ENST00000660519.1	LINC00616-219	1445	No protein	-	lncRNA	-	-
ENST00000665179.1	LINC00616-228	1429	No protein	-	lncRNA	-	-
ENST00000663909.1	LINC00616-226	1409	No protein	-	lncRNA	-	-
ENST00000658598.1	LINC00616-213	1378	No protein	-	lncRNA	-	-
ENST00000654802.1	LINC00616-209	1359	No protein	-	lncRNA	-	-
ENST00000665542.1	LINC00616-229	1355	No protein	-	lncRNA	-	-
ENST00000668210.1	LINC00616-238	1355	No protein	-	lncRNA	-	-
ENST00000653614.1	LINC00616-206	1348	No protein	-	lncRNA	-	-
ENST00000655762.1	LINC00616-210	1256	No protein	-	lncRNA	-	-
ENST00000666002.1	LINC00616-231	1245	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000667051.2	LINC00616-236	1215	No protein	-	lncRNA	-	-
ENST00000660118.1	LINC00616-217	1214	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000731856.1	LINC00616-251	1209	No protein	-	lncRNA	-	-
ENST00000731852.1	LINC00616-247	1203	No protein	-	lncRNA	-	-
ENST00000659677.1	LINC00616-216	1188	No protein	-	lncRNA	-	-
ENST00000660556.1	LINC00616-220	1176	No protein	-	lncRNA	-	-
ENST00000653774.1	LINC00616-207	1176	No protein	-	lncRNA	-	-
ENST00000668713.2	LINC00616-239	1175	No protein	-	lncRNA	-	-
ENST00000661479.1	LINC00616-222	1171	No protein	-	lncRNA	-	-
ENST00000731867.1	LINC00616-262	1104	No protein	-	lncRNA	-	-
ENST00000663598.1	LINC00616-225	1098	No protein	-	lncRNA	-	-
ENST00000665774.1	LINC00616-230	1092	No protein	-	lncRNA	-	-
ENST00000660320.1	LINC00616-218	1086	No protein	-	lncRNA	-	-
ENST00000731858.1	LINC00616-253	1076	No protein	-	lncRNA	-	-
ENST00000656980.1	LINC00616-212	1062	No protein	-	lncRNA	-	-
ENST00000670649.1	LINC00616-241	1035	No protein	-	lncRNA	-	-
ENST00000731870.1	LINC00616-265	1034	No protein	-	lncRNA	-	-
ENST00000731863.1	LINC00616-258	1033	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661963.1	LINC00616-223	1021	No protein	-	lncRNA	-	-
ENST00000662849.1	LINC00616-224	1020	No protein	-	lncRNA	-	-
ENST00000661081.1	LINC00616-221	997	No protein	-	lncRNA	-	-
ENST00000731868.1	LINC00616-263	986	No protein	-	lncRNA	-	-
ENST00000731864.1	LINC00616-259	978	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000671369.1	LINC00616-243	972	No protein	-	lncRNA	-	-
ENST00000731855.1	LINC00616-250	968	No protein	-	lncRNA	-	-
ENST00000512536.6	LINC00616-203	921	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000666325.2	LINC00616-232	916	No protein	-	lncRNA	-	-
ENST00000731861.1	LINC00616-256	915	No protein	-	lncRNA	-	-
ENST00000731860.1	LINC00616-255	906	No protein	-	lncRNA	-	-
ENST00000731851.1	LINC00616-246	905	No protein	-	lncRNA	-	-
ENST00000731865.1	LINC00616-260	884	No protein	-	lncRNA	-	-
ENST00000731862.1	LINC00616-257	859	No protein	-	lncRNA	-	-
ENST00000667784.1	LINC00616-237	851	No protein	-	lncRNA	-	-
ENST00000731854.1	LINC00616-249	848	No protein	-	lncRNA	-	-
ENST00000666423.1	LINC00616-233	844	No protein	-	lncRNA	-	-
ENST00000731853.1	LINC00616-248	832	No protein	-	lncRNA	-	-
ENST00000664696.1	LINC00616-227	825	No protein	-	lncRNA	-	-
ENST00000505874.3	LINC00616-202	816	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000731850.1	LINC00616-245	787	No protein	-	lncRNA	-	-
ENST00000731859.1	LINC00616-254	780	No protein	-	lncRNA	-	-
ENST00000731874.1	LINC00616-269	780	No protein	-	lncRNA	-	-
ENST00000731857.1	LINC00616-252	772	No protein	-	lncRNA	-	-
ENST00000731869.1	LINC00616-264	657	No protein	-	lncRNA	-	-
ENST00000513895.2	LINC00616-204	624	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000731873.1	LINC00616-268	604	No protein	-	lncRNA	-	-
ENST00000731872.1	LINC00616-267	541	No protein	-	lncRNA	-	-
ENST00000503208.1	LINC00616-201	498	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000731871.1	LINC00616-266	395	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,

Summary

Statistics

Exons: 8, Coding exons: 0, Transcript length: 1,445 bps,

Version

ENST00000660519.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000660519.1 LINC00616-219

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Transcript: ENST00000660519.1 LINC00616-219

Summary

About Us

Get help

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