Transcript: ENST00000660071.1 MALINC1-213

Description

mitosis associated long intergenic non-coding RNA 1 [Source:HGNC Symbol;Acc:HGNC:49009]

Gene Synonyms

LINC01024, MA-LINC1

Location

Chromosome 5: 140,101,453-140,108,831 reverse strand.

About this transcript

This transcript has 5 exons and maps to 174 oligo probes.

Gene

This transcript is a product of gene ENSG00000245146.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000663778.1	MALINC1-214	2369	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000654348.1	MALINC1-209	3974	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000499203.8	MALINC1-201	3654	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000660071.1	MALINC1-213	3288	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000671132.1	MALINC1-216	3241	No protein	-	lncRNA	-	-
ENST00000656599.2	MALINC1-210	3241	No protein	-	lncRNA	-	-
ENST00000522747.7	MALINC1-206	2947	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000659306.1	MALINC1-211	2573	No protein	-	lncRNA	-	-
ENST00000521563.6	MALINC1-205	2554	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000653092.1	MALINC1-208	2513	No protein	-	lncRNA	-	-
ENST00000659960.1	MALINC1-212	2505	No protein	-	lncRNA	-	-
ENST00000668151.2	MALINC1-215	1911	No protein	-	lncRNA	-	-
ENST00000719581.1	MALINC1-220	1659	No protein	-	lncRNA	-	-
ENST00000671248.1	MALINC1-217	1652	No protein	-	lncRNA	-	-
ENST00000518790.2	MALINC1-202	1186	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000719579.1	MALINC1-218	1135	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000520928.2	MALINC1-203	1099	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000719586.1	MALINC1-225	1091	No protein	-	lncRNA	-	-
ENST00000719588.1	MALINC1-227	1024	No protein	-	lncRNA	-	-
ENST00000719584.1	MALINC1-223	944	No protein	-	lncRNA	-	-
ENST00000719580.1	MALINC1-219	928	No protein	-	lncRNA	-	-
ENST00000719597.1	MALINC1-236	926	No protein	-	lncRNA	-	-
ENST00000719598.1	MALINC1-237	879	No protein	-	lncRNA	-	-
ENST00000719585.1	MALINC1-224	875	No protein	-	lncRNA	-	-
ENST00000521133.2	MALINC1-204	868	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000719587.1	MALINC1-226	860	No protein	-	lncRNA	-	-
ENST00000719590.1	MALINC1-229	835	No protein	-	lncRNA	-	-
ENST00000719589.1	MALINC1-228	807	No protein	-	lncRNA	-	-
ENST00000719592.1	MALINC1-231	805	No protein	-	lncRNA	-	-
ENST00000719583.1	MALINC1-222	797	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000719582.1	MALINC1-221	788	No protein	-	lncRNA	-	-
ENST00000719591.1	MALINC1-230	782	No protein	-	lncRNA	-	-
ENST00000719594.1	MALINC1-233	653	No protein	-	lncRNA	-	-
ENST00000719596.1	MALINC1-235	635	No protein	-	lncRNA	-	-
ENST00000719595.1	MALINC1-234	628	No protein	-	lncRNA	-	-
ENST00000719599.1	MALINC1-238	619	No protein	-	lncRNA	-	-
ENST00000523452.5	MALINC1-207	555	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000719593.1	MALINC1-232	478	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 3,288 bps,

Version

ENST00000660071.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000660071.1 MALINC1-213

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Transcript: ENST00000660071.1 MALINC1-213

Summary

About Us

Get help

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