Transcript: ENST00000659977.2 LINC01060-211

Description

long intergenic non-protein coding RNA 1060 [Source:HGNC Symbol;Acc:HGNC:49081]

Location

Chromosome 4: 188,437,937-188,486,620 forward strand.

About this transcript

This transcript has 5 exons and maps to 174 oligo probes.

Gene

This transcript is a product of gene ENSG00000249378.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000664177.2	LINC01060-214	737	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000510832.6	LINC01060-204	2459	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000657685.2	LINC01060-210	2200	No protein	-	lncRNA	-	-
ENST00000806943.1	LINC01060-253	2163	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000667003.3	LINC01060-218	2153	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000806945.1	LINC01060-255	1941	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659977.2	LINC01060-211	1434	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000806955.1	LINC01060-265	1345	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000806953.1	LINC01060-263	1317	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000806932.1	LINC01060-242	1272	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000806927.1	LINC01060-237	1250	No protein	-	lncRNA	-	-
ENST00000806940.1	LINC01060-250	1232	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655286.2	LINC01060-207	1204	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000664234.1	LINC01060-215	1199	No protein	-	lncRNA	-	-
ENST00000806941.1	LINC01060-251	1166	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000667802.1	LINC01060-220	1139	No protein	-	lncRNA	-	-
ENST00000806946.1	LINC01060-256	1136	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000806952.1	LINC01060-262	1119	No protein	-	lncRNA	-	-
ENST00000503458.9	LINC01060-201	1070	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000806944.1	LINC01060-254	1057	No protein	-	lncRNA	-	-
ENST00000806933.1	LINC01060-243	1054	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000666759.2	LINC01060-217	1018	No protein	-	lncRNA	-	-
ENST00000510005.7	LINC01060-203	1003	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000806931.1	LINC01060-241	1001	No protein	-	lncRNA	-	-
ENST00000806921.1	LINC01060-231	985	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000806939.1	LINC01060-249	978	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000806930.1	LINC01060-240	945	No protein	-	lncRNA	-	-
ENST00000806956.1	LINC01060-266	943	No protein	-	lncRNA	-	-
ENST00000662888.2	LINC01060-212	909	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000806926.1	LINC01060-236	890	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000806929.1	LINC01060-239	881	No protein	-	lncRNA	-	-
ENST00000667883.2	LINC01060-221	877	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000806942.1	LINC01060-252	873	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000806938.1	LINC01060-248	857	No protein	-	lncRNA	-	-
ENST00000806951.1	LINC01060-261	848	No protein	-	lncRNA	-	-
ENST00000806963.1	LINC01060-273	833	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656246.2	LINC01060-208	819	No protein	-	lncRNA	-	-
ENST00000806936.1	LINC01060-246	798	No protein	-	lncRNA	-	-
ENST00000667271.2	LINC01060-219	795	No protein	-	lncRNA	-	-
ENST00000806954.1	LINC01060-264	793	No protein	-	lncRNA	-	-
ENST00000692519.2	LINC01060-223	788	No protein	-	lncRNA	-	-
ENST00000663631.3	LINC01060-213	763	No protein	-	lncRNA	-	-
ENST00000806937.1	LINC01060-247	761	No protein	-	lncRNA	-	-
ENST00000666634.2	LINC01060-216	758	No protein	-	lncRNA	-	-
ENST00000806947.1	LINC01060-257	750	No protein	-	lncRNA	-	-
ENST00000806916.1	LINC01060-226	749	No protein	-	lncRNA	-	-
ENST00000701950.2	LINC01060-224	743	No protein	-	lncRNA	-	-
ENST00000512839.5	LINC01060-205	716	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000806920.1	LINC01060-230	713	No protein	-	lncRNA	-	-
ENST00000806935.1	LINC01060-245	713	No protein	-	lncRNA	-	-
ENST00000806918.1	LINC01060-228	701	No protein	-	lncRNA	-	-
ENST00000806949.1	LINC01060-259	694	No protein	-	lncRNA	-	-
ENST00000806915.1	LINC01060-225	664	No protein	-	lncRNA	-	-
ENST00000806934.1	LINC01060-244	659	No protein	-	lncRNA	-	-
ENST00000806919.1	LINC01060-229	654	No protein	-	lncRNA	-	-
ENST00000806950.1	LINC01060-260	641	No protein	-	lncRNA	-	-
ENST00000806925.1	LINC01060-235	624	No protein	-	lncRNA	-	-
ENST00000657654.1	LINC01060-209	608	No protein	-	lncRNA	-	-
ENST00000806928.1	LINC01060-238	593	No protein	-	lncRNA	-	-
ENST00000806959.1	LINC01060-269	582	No protein	-	lncRNA	-	-
ENST00000806924.1	LINC01060-234	570	No protein	-	lncRNA	-	-
ENST00000806917.1	LINC01060-227	530	No protein	-	lncRNA	-	-
ENST00000806960.1	LINC01060-270	483	No protein	-	lncRNA	-	-
ENST00000806958.1	LINC01060-268	439	No protein	-	lncRNA	-	-
ENST00000806922.1	LINC01060-232	421	No protein	-	lncRNA	-	-
ENST00000806965.1	LINC01060-275	420	No protein	-	lncRNA	-	-
ENST00000503580.1	LINC01060-202	418	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000513313.5	LINC01060-206	382	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000685943.1	LINC01060-222	375	No protein	-	lncRNA	-	-
ENST00000806948.1	LINC01060-258	374	No protein	-	lncRNA	-	-
ENST00000806962.1	LINC01060-272	369	No protein	-	lncRNA	-	-
ENST00000806964.1	LINC01060-274	361	No protein	-	lncRNA	-	-
ENST00000806923.1	LINC01060-233	355	No protein	-	lncRNA	-	-
ENST00000806957.1	LINC01060-267	301	No protein	-	lncRNA	-	-
ENST00000806961.1	LINC01060-271	269	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,434 bps,

Version

ENST00000659977.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000659977.2 LINC01060-211

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Transcript: ENST00000659977.2 LINC01060-211

Summary

About Us

Get help

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