Transcript: ENST00000659640.1 LINC02546-209

Description

long intergenic non-protein coding RNA 2546 [Source:HGNC Symbol;Acc:HGNC:53581]

Location

Chromosome 11: 29,618,802-29,630,680 forward strand.

About this transcript

This transcript has 4 exons and maps to 182 oligo probes.

Gene

This transcript is a product of gene ENSG00000255117.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000742805.1	LINC02546-213	742	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661544.2	LINC02546-212	1360	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658603.1	LINC02546-207	1355	No protein	-	lncRNA	-	-
ENST00000656808.2	LINC02546-203	1255	No protein	-	lncRNA	-	-
ENST00000658163.1	LINC02546-206	1068	No protein	-	lncRNA	-	-
ENST00000660254.1	LINC02546-211	1004	No protein	-	lncRNA	-	-
ENST00000659640.1	LINC02546-209	992	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000742806.1	LINC02546-214	892	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000528119.3	LINC02546-202	849	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000660023.1	LINC02546-210	829	No protein	-	lncRNA	-	-
ENST00000527492.6	LINC02546-201	742	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000656975.1	LINC02546-204	721	No protein	-	lncRNA	-	-
ENST00000657882.1	LINC02546-205	654	No protein	-	lncRNA	-	-
ENST00000659062.2	LINC02546-208	525	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 992 bps,

Version

ENST00000659640.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000659640.1 LINC02546-209

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Transcript: ENST00000659640.1 LINC02546-209

Summary

About Us

Get help

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