Transcript: ENST00000659414.1 LINC01478-209

Description

long intergenic non-protein coding RNA 1478 [Source:HGNC Symbol;Acc:HGNC:51121]

Location

Chromosome 18: 44,323,434-44,531,707 reverse strand.

About this transcript

This transcript has 4 exons and maps to 170 oligo probes.

Gene

This transcript is a product of gene ENSG00000267337.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000657927.1	LINC01478-208	1527	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000664337.1	LINC01478-218	2084	No protein	-	lncRNA	-	-
ENST00000587877.2	LINC01478-201	2078	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000654586.1	LINC01478-205	2014	No protein	-	lncRNA	-	-
ENST00000659414.1	LINC01478-209	1936	No protein	-	lncRNA	-	-
ENST00000668470.1	LINC01478-227	1585	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000667873.1	LINC01478-225	1479	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670858.1	LINC01478-231	1476	No protein	-	lncRNA	-	-
ENST00000661590.1	LINC01478-214	1472	No protein	-	lncRNA	-	-
ENST00000660684.1	LINC01478-212	1443	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000660866.1	LINC01478-213	1405	No protein	-	lncRNA	-	-
ENST00000663353.1	LINC01478-216	1375	No protein	-	lncRNA	-	-
ENST00000667772.1	LINC01478-224	1364	No protein	-	lncRNA	-	-
ENST00000659766.1	LINC01478-211	1358	No protein	-	lncRNA	-	-
ENST00000773127.1	LINC01478-232	1343	No protein	-	lncRNA	-	-
ENST00000656465.1	LINC01478-206	1324	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656528.1	LINC01478-207	1317	No protein	-	lncRNA	-	-
ENST00000666688.1	LINC01478-223	1264	No protein	-	lncRNA	-	-
ENST00000664723.1	LINC01478-219	1220	No protein	-	lncRNA	-	-
ENST00000666277.1	LINC01478-222	1219	No protein	-	lncRNA	-	-
ENST00000662019.1	LINC01478-215	1213	No protein	-	lncRNA	-	-
ENST00000659598.1	LINC01478-210	1211	No protein	-	lncRNA	-	-
ENST00000665202.1	LINC01478-221	1192	No protein	-	lncRNA	-	-
ENST00000653780.1	LINC01478-204	1183	No protein	-	lncRNA	-	-
ENST00000664969.1	LINC01478-220	1181	No protein	-	lncRNA	-	-
ENST00000669871.1	LINC01478-229	1159	No protein	-	lncRNA	-	-
ENST00000663869.1	LINC01478-217	1081	No protein	-	lncRNA	-	-
ENST00000667908.1	LINC01478-226	994	No protein	-	lncRNA	-	-
ENST00000670168.1	LINC01478-230	941	No protein	-	lncRNA	-	-
ENST00000773132.1	LINC01478-237	906	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000669315.1	LINC01478-228	764	No protein	-	lncRNA	-	-
ENST00000653402.2	LINC01478-203	736	No protein	-	lncRNA	-	-
ENST00000773128.1	LINC01478-233	715	No protein	-	lncRNA	-	-
ENST00000773139.1	LINC01478-244	704	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000773141.1	LINC01478-246	681	No protein	-	lncRNA	-	-
ENST00000773135.1	LINC01478-240	633	No protein	-	lncRNA	-	-
ENST00000773138.1	LINC01478-243	608	No protein	-	lncRNA	-	-
ENST00000773137.1	LINC01478-242	591	No protein	-	lncRNA	-	-
ENST00000773140.1	LINC01478-245	586	No protein	-	lncRNA	-	-
ENST00000773136.1	LINC01478-241	579	No protein	-	lncRNA	-	-
ENST00000591487.1	LINC01478-202	575	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000773131.1	LINC01478-236	575	No protein	-	lncRNA	-	-
ENST00000773129.1	LINC01478-234	512	No protein	-	lncRNA	-	-
ENST00000773142.1	LINC01478-247	486	No protein	-	lncRNA	-	-
ENST00000773133.1	LINC01478-238	461	No protein	-	lncRNA	-	-
ENST00000773134.1	LINC01478-239	437	No protein	-	lncRNA	-	-
ENST00000773130.1	LINC01478-235	362	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,936 bps,

Version

ENST00000659414.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000659414.1 LINC01478-209

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Transcript: ENST00000659414.1 LINC01478-209

Summary

About Us

Get help

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