Transcript: ENST00000659301.2 LINC00540-208

Description

long intergenic non-protein coding RNA 540 [Source:HGNC Symbol;Acc:HGNC:43673]

Location

Chromosome 13: 22,107,409-22,276,524 forward strand.

About this transcript

This transcript has 2 exons and maps to 181 oligo probes.

Gene

This transcript is a product of gene ENSG00000276476.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000631321.1	LINC00540-203	2412	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000690279.2	LINC00540-209	2546	No protein	-	lncRNA	-	-
ENST00000721755.1	LINC00540-210	2390	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659301.2	LINC00540-208	2228	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721766.1	LINC00540-221	2227	No protein	-	lncRNA	-	-
ENST00000655363.2	LINC00540-204	2215	No protein	-	lncRNA	-	-
ENST00000658741.1	LINC00540-207	2206	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000616974.1	LINC00540-202	2143	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000721761.1	LINC00540-216	1796	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721767.1	LINC00540-222	1613	No protein	-	lncRNA	-	-
ENST00000721760.1	LINC00540-215	1501	No protein	-	lncRNA	-	-
ENST00000721759.1	LINC00540-214	1488	No protein	-	lncRNA	-	-
ENST00000721764.1	LINC00540-219	1452	No protein	-	lncRNA	-	-
ENST00000721758.1	LINC00540-213	1424	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721763.1	LINC00540-218	1409	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721756.1	LINC00540-211	1357	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721757.1	LINC00540-212	1255	No protein	-	lncRNA	-	-
ENST00000657205.1	LINC00540-206	1145	No protein	-	lncRNA	-	-
ENST00000721762.1	LINC00540-217	1020	No protein	-	lncRNA	-	-
ENST00000656522.2	LINC00540-205	628	No protein	-	lncRNA	-	-
ENST00000611481.1	LINC00540-201	588	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000721765.1	LINC00540-220	396	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 2,228 bps,

Version

ENST00000659301.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000659301.2 LINC00540-208

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Transcript: ENST00000659301.2 LINC00540-208

Summary

About Us

Get help

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