Transcript: ENST00000658403.1 LINC01980-214

Description

long intergenic non-protein coding RNA 1980 [Source:HGNC Symbol;Acc:HGNC:52808]

Location

Chromosome 3: 27,797,575-27,860,320 forward strand.

About this transcript

This transcript has 6 exons and maps to 127 oligo probes.

Gene

This transcript is a product of gene ENSG00000225548.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000647336.1	LINC01980-204	1819	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000746460.1	LINC01980-246	2081	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000663111.1	LINC01980-223	1309	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670767.1	LINC01980-237	1301	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000663087.1	LINC01980-222	1216	No protein	-	lncRNA	-	-
ENST00000669343.1	LINC01980-235	1193	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668561.1	LINC01980-231	1190	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000664737.1	LINC01980-225	1185	No protein	-	lncRNA	-	-
ENST00000661836.1	LINC01980-220	1162	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000660141.1	LINC01980-216	1158	No protein	-	lncRNA	-	-
ENST00000660828.1	LINC01980-219	1157	No protein	-	lncRNA	-	-
ENST00000669745.1	LINC01980-236	1138	No protein	-	lncRNA	-	-
ENST00000660687.1	LINC01980-217	1095	No protein	-	lncRNA	-	-
ENST00000665786.1	LINC01980-228	1086	No protein	-	lncRNA	-	-
ENST00000670769.1	LINC01980-238	1083	No protein	-	lncRNA	-	-
ENST00000658403.1	LINC01980-214	1033	No protein	-	lncRNA	-	-
ENST00000663074.1	LINC01980-221	1032	No protein	-	lncRNA	-	-
ENST00000668400.1	LINC01980-230	1027	No protein	-	lncRNA	-	-
ENST00000660818.1	LINC01980-218	1009	No protein	-	lncRNA	-	-
ENST00000653500.1	LINC01980-208	991	No protein	-	lncRNA	-	-
ENST00000667173.1	LINC01980-229	975	No protein	-	lncRNA	-	-
ENST00000746456.1	LINC01980-242	954	No protein	-	lncRNA	-	-
ENST00000659724.1	LINC01980-215	953	No protein	-	lncRNA	-	-
ENST00000746467.1	LINC01980-253	947	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655422.1	LINC01980-211	944	No protein	-	lncRNA	-	-
ENST00000746459.1	LINC01980-245	942	No protein	-	lncRNA	-	-
ENST00000669211.1	LINC01980-234	929	No protein	-	lncRNA	-	-
ENST00000746453.1	LINC01980-239	901	No protein	-	lncRNA	-	-
ENST00000652951.2	LINC01980-205	893	No protein	-	lncRNA	-	-
ENST00000653125.1	LINC01980-206	890	No protein	-	lncRNA	-	-
ENST00000665057.1	LINC01980-226	858	No protein	-	lncRNA	-	-
ENST00000656964.1	LINC01980-213	841	No protein	-	lncRNA	-	-
ENST00000665634.1	LINC01980-227	827	No protein	-	lncRNA	-	-
ENST00000746455.1	LINC01980-241	807	No protein	-	lncRNA	-	-
ENST00000654315.1	LINC01980-210	797	No protein	-	lncRNA	-	-
ENST00000668591.1	LINC01980-232	792	No protein	-	lncRNA	-	-
ENST00000654194.2	LINC01980-209	785	No protein	-	lncRNA	-	-
ENST00000455984.2	LINC01980-203	747	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000668917.1	LINC01980-233	743	No protein	-	lncRNA	-	-
ENST00000663406.2	LINC01980-224	697	No protein	-	lncRNA	-	-
ENST00000746457.1	LINC01980-243	685	No protein	-	lncRNA	-	-
ENST00000653311.1	LINC01980-207	671	No protein	-	lncRNA	-	-
ENST00000746468.1	LINC01980-254	661	No protein	-	lncRNA	-	-
ENST00000746454.1	LINC01980-240	652	No protein	-	lncRNA	-	-
ENST00000746464.1	LINC01980-250	625	No protein	-	lncRNA	-	-
ENST00000655661.1	LINC01980-212	624	No protein	-	lncRNA	-	-
ENST00000746465.1	LINC01980-251	582	No protein	-	lncRNA	-	-
ENST00000746463.1	LINC01980-249	544	No protein	-	lncRNA	-	-
ENST00000414382.5	LINC01980-201	543	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000746461.1	LINC01980-247	522	No protein	-	lncRNA	-	-
ENST00000746458.1	LINC01980-244	518	No protein	-	lncRNA	-	-
ENST00000746462.1	LINC01980-248	502	No protein	-	lncRNA	-	-
ENST00000425195.6	LINC01980-202	493	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000746466.1	LINC01980-252	442	No protein	-	lncRNA	-	-
ENST00000746469.1	LINC01980-255	434	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 6, Coding exons: 0, Transcript length: 1,033 bps,

Version

ENST00000658403.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000658403.1 LINC01980-214

Summary

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Transcript: ENST00000658403.1 LINC01980-214

Summary

About Us

Get help

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