Transcript: ENST00000657807.1 LINC00964-229

Description

long intergenic non-protein coding RNA 964 [Source:HGNC Symbol;Acc:HGNC:27226]

Location

Chromosome 8: 124,942,788-124,951,177 forward strand.

About this transcript

This transcript has 5 exons and maps to 233 oligo probes.

Gene

This transcript is a product of gene ENSG00000249816.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000657463.1	LINC00964-226	848	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000510897.7	LINC00964-202	3536	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000669524.1	LINC00964-274	3066	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661433.1	LINC00964-241	2961	No protein	-	lncRNA	-	-
ENST00000504665.5	LINC00964-201	2203	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000663062.1	LINC00964-247	2177	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000759242.1	LINC00964-301	2056	No protein	-	lncRNA	-	-
ENST00000664707.2	LINC00964-261	1974	No protein	-	lncRNA	-	-
ENST00000655947.1	LINC00964-217	1946	No protein	-	lncRNA	-	-
ENST00000654275.1	LINC00964-212	1906	No protein	-	lncRNA	-	-
ENST00000662376.1	LINC00964-244	1865	No protein	-	lncRNA	-	-
ENST00000759240.1	LINC00964-299	1863	No protein	-	lncRNA	-	-
ENST00000656616.1	LINC00964-223	1847	No protein	-	lncRNA	-	-
ENST00000663141.1	LINC00964-248	1809	No protein	-	lncRNA	-	-
ENST00000661165.1	LINC00964-239	1802	No protein	-	lncRNA	-	-
ENST00000663231.1	LINC00964-250	1793	No protein	-	lncRNA	-	-
ENST00000665494.1	LINC00964-266	1784	No protein	-	lncRNA	-	-
ENST00000662674.1	LINC00964-246	1773	No protein	-	lncRNA	-	-
ENST00000666477.1	LINC00964-267	1758	No protein	-	lncRNA	-	-
ENST00000658422.1	LINC00964-232	1733	No protein	-	lncRNA	-	-
ENST00000667605.1	LINC00964-271	1729	No protein	-	lncRNA	-	-
ENST00000663922.1	LINC00964-256	1729	No protein	-	lncRNA	-	-
ENST00000661407.1	LINC00964-240	1707	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000657718.1	LINC00964-227	1697	No protein	-	lncRNA	-	-
ENST00000663765.1	LINC00964-254	1682	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000759241.1	LINC00964-300	1664	No protein	-	lncRNA	-	-
ENST00000670200.1	LINC00964-277	1594	No protein	-	lncRNA	-	-
ENST00000657296.1	LINC00964-225	1571	No protein	-	lncRNA	-	-
ENST00000660364.1	LINC00964-237	1537	No protein	-	lncRNA	-	-
ENST00000665263.1	LINC00964-263	1537	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000525292.8	LINC00964-203	1532	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000670706.1	LINC00964-280	1524	No protein	-	lncRNA	-	-
ENST00000657752.1	LINC00964-228	1492	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000665293.1	LINC00964-264	1491	No protein	-	lncRNA	-	-
ENST00000671263.1	LINC00964-282	1482	No protein	-	lncRNA	-	-
ENST00000660517.1	LINC00964-238	1473	No protein	-	lncRNA	-	-
ENST00000670950.1	LINC00964-281	1463	No protein	-	lncRNA	-	-
ENST00000665389.2	LINC00964-265	1435	No protein	-	lncRNA	-	-
ENST00000658171.1	LINC00964-231	1416	No protein	-	lncRNA	-	-
ENST00000657807.1	LINC00964-229	1410	No protein	-	lncRNA	-	-
ENST00000670035.1	LINC00964-275	1383	No protein	-	lncRNA	-	-
ENST00000660004.1	LINC00964-235	1382	No protein	-	lncRNA	-	-
ENST00000670322.1	LINC00964-278	1360	No protein	-	lncRNA	-	-
ENST00000659472.1	LINC00964-233	1357	No protein	-	lncRNA	-	-
ENST00000663920.1	LINC00964-255	1342	No protein	-	lncRNA	-	-
ENST00000670566.1	LINC00964-279	1315	No protein	-	lncRNA	-	-
ENST00000529135.2	LINC00964-205	1301	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000759239.1	LINC00964-298	1300	No protein	-	lncRNA	-	-
ENST00000655319.1	LINC00964-215	1298	No protein	-	lncRNA	-	-
ENST00000664218.1	LINC00964-260	1294	No protein	-	lncRNA	-	-
ENST00000664110.1	LINC00964-259	1283	No protein	-	lncRNA	-	-
ENST00000663475.1	LINC00964-252	1272	No protein	-	lncRNA	-	-
ENST00000664851.1	LINC00964-262	1263	No protein	-	lncRNA	-	-
ENST00000653797.1	LINC00964-211	1254	No protein	-	lncRNA	-	-
ENST00000759238.1	LINC00964-297	1253	No protein	-	lncRNA	-	-
ENST00000533286.6	LINC00964-209	1234	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000661949.1	LINC00964-242	1233	No protein	-	lncRNA	-	-
ENST00000656094.1	LINC00964-219	1225	No protein	-	lncRNA	-	-
ENST00000663940.1	LINC00964-257	1209	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668837.1	LINC00964-272	1205	No protein	-	lncRNA	-	-
ENST00000663450.1	LINC00964-251	1190	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000662253.1	LINC00964-243	1160	No protein	-	lncRNA	-	-
ENST00000759235.1	LINC00964-294	1160	No protein	-	lncRNA	-	-
ENST00000759232.1	LINC00964-291	1159	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659706.1	LINC00964-234	1149	No protein	-	lncRNA	-	-
ENST00000656339.1	LINC00964-221	1141	No protein	-	lncRNA	-	-
ENST00000660300.2	LINC00964-236	1131	No protein	-	lncRNA	-	-
ENST00000656467.1	LINC00964-222	1120	No protein	-	lncRNA	-	-
ENST00000669297.2	LINC00964-273	1118	No protein	-	lncRNA	-	-
ENST00000653724.1	LINC00964-210	1061	No protein	-	lncRNA	-	-
ENST00000662419.1	LINC00964-245	1055	No protein	-	lncRNA	-	-
ENST00000759237.1	LINC00964-296	1045	No protein	-	lncRNA	-	-
ENST00000670165.1	LINC00964-276	1038	No protein	-	lncRNA	-	-
ENST00000654805.2	LINC00964-214	1030	No protein	-	lncRNA	-	-
ENST00000663965.2	LINC00964-258	1025	No protein	-	lncRNA	-	-
ENST00000656869.1	LINC00964-224	1023	No protein	-	lncRNA	-	-
ENST00000666508.2	LINC00964-268	994	No protein	-	lncRNA	-	-
ENST00000654344.1	LINC00964-213	962	No protein	-	lncRNA	-	-
ENST00000656280.1	LINC00964-220	956	No protein	-	lncRNA	-	-
ENST00000663642.1	LINC00964-253	950	No protein	-	lncRNA	-	-
ENST00000759226.1	LINC00964-285	943	No protein	-	lncRNA	-	-
ENST00000655637.2	LINC00964-216	941	No protein	-	lncRNA	-	-
ENST00000663195.1	LINC00964-249	905	No protein	-	lncRNA	-	-
ENST00000759230.1	LINC00964-289	903	No protein	-	lncRNA	-	-
ENST00000667269.1	LINC00964-270	881	No protein	-	lncRNA	-	-
ENST00000671628.1	LINC00964-283	847	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656062.1	LINC00964-218	840	No protein	-	lncRNA	-	-
ENST00000759225.1	LINC00964-284	818	No protein	-	lncRNA	-	-
ENST00000658039.1	LINC00964-230	814	No protein	-	lncRNA	-	-
ENST00000759227.1	LINC00964-286	806	No protein	-	lncRNA	-	-
ENST00000759228.1	LINC00964-287	749	No protein	-	lncRNA	-	-
ENST00000759234.1	LINC00964-293	739	No protein	-	lncRNA	-	-
ENST00000530549.2	LINC00964-207	737	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000666745.1	LINC00964-269	734	No protein	-	lncRNA	-	-
ENST00000532713.2	LINC00964-208	686	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000529478.2	LINC00964-206	654	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000759231.1	LINC00964-290	649	No protein	-	lncRNA	-	-
ENST00000528090.5	LINC00964-204	572	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000759229.1	LINC00964-288	561	No protein	-	lncRNA	-	-
ENST00000759233.1	LINC00964-292	517	No protein	-	lncRNA	-	-
ENST00000759243.1	LINC00964-302	449	No protein	-	lncRNA	-	-
ENST00000759244.1	LINC00964-303	399	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000759236.1	LINC00964-295	316	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,410 bps,

Version

ENST00000657807.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000657807.1 LINC00964-229

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Transcript: ENST00000657807.1 LINC00964-229

Summary

About Us

Get help

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