Transcript: ENST00000657246.1 LINC02020-209

Description

long intergenic non-protein coding RNA 2020 [Source:HGNC Symbol;Acc:HGNC:52855]

Location

Chromosome 3: 186,440,389-186,450,706 forward strand.

About this transcript

This transcript has 4 exons and maps to 258 oligo probes.

Gene

This transcript is a product of gene ENSG00000234548.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000659303.1	LINC02020-213	755	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000662106.1	LINC02020-217	2166	No protein	-	lncRNA	-	-
ENST00000665288.1	LINC02020-222	1676	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659833.1	LINC02020-214	1620	No protein	-	lncRNA	-	-
ENST00000661596.1	LINC02020-216	1620	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658309.1	LINC02020-212	1575	No protein	-	lncRNA	-	-
ENST00000799267.1	LINC02020-228	1485	No protein	-	lncRNA	-	-
ENST00000657428.1	LINC02020-210	1473	No protein	-	lncRNA	-	-
ENST00000421006.3	LINC02020-202	1438	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000657246.1	LINC02020-209	1427	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670005.1	LINC02020-225	1398	No protein	-	lncRNA	-	-
ENST00000653290.1	LINC02020-206	1373	No protein	-	lncRNA	-	-
ENST00000660881.1	LINC02020-215	1342	No protein	-	lncRNA	-	-
ENST00000671153.1	LINC02020-227	1276	No protein	-	lncRNA	-	-
ENST00000658003.1	LINC02020-211	1259	No protein	-	lncRNA	-	-
ENST00000653327.1	LINC02020-207	1244	No protein	-	lncRNA	-	-
ENST00000662985.1	LINC02020-218	1184	No protein	-	lncRNA	-	-
ENST00000663132.1	LINC02020-219	1157	No protein	-	lncRNA	-	-
ENST00000651581.1	LINC02020-205	1132	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000664789.1	LINC02020-221	1088	No protein	-	lncRNA	-	-
ENST00000655604.1	LINC02020-208	1082	No protein	-	lncRNA	-	-
ENST00000670102.1	LINC02020-226	1061	No protein	-	lncRNA	-	-
ENST00000665684.1	LINC02020-223	919	No protein	-	lncRNA	-	-
ENST00000435548.2	LINC02020-204	900	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000414102.6	LINC02020-201	896	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000799268.1	LINC02020-229	830	No protein	-	lncRNA	-	-
ENST00000667882.1	LINC02020-224	796	No protein	-	lncRNA	-	-
ENST00000663703.1	LINC02020-220	470	No protein	-	lncRNA	-	-
ENST00000434896.1	LINC02020-203	423	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,427 bps,

Version

ENST00000657246.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000657246.1 LINC02020-209

Summary

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Transcript: ENST00000657246.1 LINC02020-209

Summary

About Us

Get help

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