Transcript: ENST00000657232.1 LINC00342-204

Description

long intergenic non-protein coding RNA 342 [Source:HGNC Symbol;Acc:HGNC:42470]

Gene Synonyms

NCRNA00342

Location

Chromosome 2: 95,807,061-95,817,831 reverse strand.

About this transcript

This transcript has 4 exons and maps to 264 oligo probes.

Gene

This transcript is a product of gene ENSG00000232931.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000662121.1	LINC00342-210	879	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000663557.1	LINC00342-211	4643	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000660416.2	LINC00342-206	3338	No protein	-	lncRNA	-	-
ENST00000448494.1	LINC00342-202	2351	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000660608.2	LINC00342-207	2098	No protein	-	lncRNA	-	-
ENST00000660641.1	LINC00342-208	2000	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661329.1	LINC00342-209	1710	No protein	-	lncRNA	-	-
ENST00000657232.1	LINC00342-204	1567	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000664191.1	LINC00342-212	1464	No protein	-	lncRNA	-	-
ENST00000655069.1	LINC00342-203	1259	No protein	-	lncRNA	-	-
ENST00000659287.1	LINC00342-205	973	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668171.1	LINC00342-213	876	No protein	-	lncRNA	-	-
ENST00000824808.1	LINC00342-215	809	No protein	-	lncRNA	-	-
ENST00000824807.1	LINC00342-214	715	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000412393.5	LINC00342-201	654	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000824809.1	LINC00342-216	552	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,567 bps,

Version

ENST00000657232.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000657232.1 LINC00342-204

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Transcript: ENST00000657232.1 LINC00342-204

Summary

About Us

Get help

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