Transcript: ENST00000657121.1 LINC00470-216

Description

long intergenic non-protein coding RNA 470 [Source:HGNC Symbol;Acc:HGNC:1225]

Gene Synonyms

C18ORF2

Location

Chromosome 18: 1,269,528-1,407,188 reverse strand.

About this transcript

This transcript has 8 exons and maps to 388 oligo probes.

Gene

This transcript is a product of gene ENSG00000132204.15 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000669242.1	LINC00470-239	1786	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000412816.8	LINC00470-201	2097	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000657919.1	LINC00470-219	2055	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000660358.1	LINC00470-223	1997	No protein	-	lncRNA	-	-
ENST00000753573.1	LINC00470-272	1870	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000580336.2	LINC00470-205	1780	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000660475.1	LINC00470-224	1766	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000663512.2	LINC00470-232	1727	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658090.1	LINC00470-220	1635	No protein	-	lncRNA	-	-
ENST00000653775.1	LINC00470-213	1627	No protein	-	lncRNA	-	-
ENST00000657423.1	LINC00470-217	1619	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661646.1	LINC00470-228	1554	No protein	-	lncRNA	-	-
ENST00000660947.1	LINC00470-225	1536	No protein	-	lncRNA	-	-
ENST00000657618.1	LINC00470-218	1516	No protein	-	lncRNA	-	-
ENST00000753561.1	LINC00470-260	1515	No protein	-	lncRNA	-	-
ENST00000655957.1	LINC00470-215	1512	No protein	-	lncRNA	-	-
ENST00000663392.1	LINC00470-231	1437	No protein	-	lncRNA	-	-
ENST00000659289.1	LINC00470-222	1433	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000667225.1	LINC00470-235	1387	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661233.1	LINC00470-227	1376	No protein	-	lncRNA	-	-
ENST00000667416.1	LINC00470-236	1355	No protein	-	lncRNA	-	-
ENST00000661852.1	LINC00470-229	1349	No protein	-	lncRNA	-	-
ENST00000584090.5	LINC00470-210	1334	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000753553.1	LINC00470-252	1289	No protein	-	lncRNA	-	-
ENST00000671558.2	LINC00470-241	1286	No protein	-	lncRNA	-	-
ENST00000753550.1	LINC00470-249	1285	No protein	-	lncRNA	-	-
ENST00000584492.5	LINC00470-211	1281	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000671645.1	LINC00470-242	1251	No protein	-	lncRNA	-	-
ENST00000661931.1	LINC00470-230	1250	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000657121.1	LINC00470-216	1239	No protein	-	lncRNA	-	-
ENST00000582862.6	LINC00470-209	1238	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000654559.1	LINC00470-214	1217	No protein	-	lncRNA	-	-
ENST00000753559.1	LINC00470-258	1216	No protein	-	lncRNA	-	-
ENST00000577867.5	LINC00470-203	1211	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000753577.1	LINC00470-276	1188	No protein	-	lncRNA	-	-
ENST00000753545.1	LINC00470-244	1184	No protein	-	lncRNA	-	-
ENST00000753549.1	LINC00470-248	1157	No protein	-	lncRNA	-	-
ENST00000753575.1	LINC00470-274	1145	No protein	-	lncRNA	-	-
ENST00000753546.1	LINC00470-245	1118	No protein	-	lncRNA	-	-
ENST00000753572.1	LINC00470-271	1090	No protein	-	lncRNA	-	-
ENST00000653213.1	LINC00470-212	1087	No protein	-	lncRNA	-	-
ENST00000667776.1	LINC00470-237	1076	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000753552.1	LINC00470-251	1070	No protein	-	lncRNA	-	-
ENST00000753569.1	LINC00470-268	1068	No protein	-	lncRNA	-	-
ENST00000753557.1	LINC00470-256	1066	No protein	-	lncRNA	-	-
ENST00000753565.1	LINC00470-264	1066	No protein	-	lncRNA	-	-
ENST00000753551.1	LINC00470-250	1065	No protein	-	lncRNA	-	-
ENST00000659094.1	LINC00470-221	1056	No protein	-	lncRNA	-	-
ENST00000753556.1	LINC00470-255	1056	No protein	-	lncRNA	-	-
ENST00000753562.1	LINC00470-261	1044	No protein	-	lncRNA	-	-
ENST00000753547.1	LINC00470-246	1042	No protein	-	lncRNA	-	-
ENST00000660964.1	LINC00470-226	1017	No protein	-	lncRNA	-	-
ENST00000753567.1	LINC00470-266	1012	No protein	-	lncRNA	-	-
ENST00000665133.1	LINC00470-233	996	No protein	-	lncRNA	-	-
ENST00000753568.1	LINC00470-267	989	No protein	-	lncRNA	-	-
ENST00000753563.1	LINC00470-262	985	No protein	-	lncRNA	-	-
ENST00000669312.1	LINC00470-240	978	No protein	-	lncRNA	-	-
ENST00000753576.1	LINC00470-275	975	No protein	-	lncRNA	-	-
ENST00000669153.1	LINC00470-238	958	No protein	-	lncRNA	-	-
ENST00000753544.1	LINC00470-243	951	No protein	-	lncRNA	-	-
ENST00000753558.1	LINC00470-257	944	No protein	-	lncRNA	-	-
ENST00000753566.1	LINC00470-265	935	No protein	-	lncRNA	-	-
ENST00000753571.1	LINC00470-270	921	No protein	-	lncRNA	-	-
ENST00000753560.1	LINC00470-259	897	No protein	-	lncRNA	-	-
ENST00000666542.1	LINC00470-234	878	No protein	-	lncRNA	-	-
ENST00000753554.1	LINC00470-253	877	No protein	-	lncRNA	-	-
ENST00000753570.1	LINC00470-269	855	No protein	-	lncRNA	-	-
ENST00000753578.1	LINC00470-277	846	No protein	-	lncRNA	-	-
ENST00000753555.1	LINC00470-254	834	No protein	-	lncRNA	-	-
ENST00000753564.1	LINC00470-263	807	No protein	-	lncRNA	-	-
ENST00000577403.6	LINC00470-202	778	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000581430.6	LINC00470-207	764	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000753548.1	LINC00470-247	754	No protein	-	lncRNA	-	-
ENST00000581212.1	LINC00470-206	721	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000578835.5	LINC00470-204	674	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000582570.1	LINC00470-208	607	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000753574.1	LINC00470-273	593	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 8, Coding exons: 0, Transcript length: 1,239 bps,

Version

ENST00000657121.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000657121.1 LINC00470-216

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Transcript: ENST00000657121.1 LINC00470-216

Summary

About Us

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