Transcript: ENST00000657079.1 LINC01684-218

Description

long intergenic non-protein coding RNA 1684 [Source:HGNC Symbol;Acc:HGNC:52472]

Gene Synonyms

LNC-JAM2-6

Location

Chromosome 21: 24,428,750-24,488,912 forward strand.

About this transcript

This transcript has 5 exons and maps to 176 oligo probes.

Gene

This transcript is a product of gene ENSG00000237484.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000656088.1	LINC01684-214	1462	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000453784.2	LINC01684-203	2908	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000826644.1	LINC01684-231	2373	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000415182.1	LINC01684-201	2176	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000656842.1	LINC01684-217	1769	No protein	-	lncRNA	-	-
ENST00000655505.1	LINC01684-212	1678	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000701591.1	LINC01684-229	1455	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000653855.1	LINC01684-206	1407	No protein	-	lncRNA	-	-
ENST00000654158.1	LINC01684-207	1364	No protein	-	lncRNA	-	-
ENST00000657079.1	LINC01684-218	1328	No protein	-	lncRNA	-	-
ENST00000671574.1	LINC01684-228	1288	No protein	-	lncRNA	-	-
ENST00000668315.1	LINC01684-225	1284	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656780.1	LINC01684-216	1266	No protein	-	lncRNA	-	-
ENST00000655241.1	LINC01684-210	1232	No protein	-	lncRNA	-	-
ENST00000655039.1	LINC01684-209	1209	No protein	-	lncRNA	-	-
ENST00000656122.1	LINC01684-215	1173	No protein	-	lncRNA	-	-
ENST00000663985.1	LINC01684-223	1126	No protein	-	lncRNA	-	-
ENST00000655294.1	LINC01684-211	1118	No protein	-	lncRNA	-	-
ENST00000670142.1	LINC01684-227	1099	No protein	-	lncRNA	-	-
ENST00000666492.1	LINC01684-224	1085	No protein	-	lncRNA	-	-
ENST00000657774.1	LINC01684-220	1084	No protein	-	lncRNA	-	-
ENST00000654771.1	LINC01684-208	1078	No protein	-	lncRNA	-	-
ENST00000662917.1	LINC01684-222	1017	No protein	-	lncRNA	-	-
ENST00000659824.1	LINC01684-221	1002	No protein	-	lncRNA	-	-
ENST00000668910.1	LINC01684-226	948	No protein	-	lncRNA	-	-
ENST00000826646.1	LINC01684-233	924	No protein	-	lncRNA	-	-
ENST00000655533.1	LINC01684-213	911	No protein	-	lncRNA	-	-
ENST00000657522.1	LINC01684-219	891	No protein	-	lncRNA	-	-
ENST00000653166.1	LINC01684-204	818	No protein	-	lncRNA	-	-
ENST00000826647.1	LINC01684-234	788	No protein	-	lncRNA	-	-
ENST00000826645.1	LINC01684-232	768	No protein	-	lncRNA	-	-
ENST00000423581.3	LINC01684-202	663	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000826648.1	LINC01684-235	546	No protein	-	lncRNA	-	-
ENST00000724112.1	LINC01684-230	463	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000653413.1	LINC01684-205	400	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 1,328 bps,

Version

ENST00000657079.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000657079.1 LINC01684-218

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000657079.1 LINC01684-218

Summary

About Us

Get help

Our sister sites

Follow us