Transcript: ENST00000656972.1 LINC01278-213

Description

long intergenic non-protein coding RNA 1278 [Source:HGNC Symbol;Acc:HGNC:28090]

Location

Chromosome X: 63,426,572-63,561,054 reverse strand.

About this transcript

This transcript has 4 exons and maps to 320 oligo probes.

Gene

This transcript is a product of gene ENSG00000235437.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000608623.1	LINC01278-202	5053	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000667050.1	LINC01278-230	1417	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000670242.1	LINC01278-235	4744	No protein	-	lncRNA	-	-
ENST00000654880.2	LINC01278-211	3896	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000662156.1	LINC01278-219	3088	No protein	-	lncRNA	-	-
ENST00000609401.6	LINC01278-205	2973	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000656972.1	LINC01278-213	2952	No protein	-	lncRNA	-	-
ENST00000671033.1	LINC01278-238	2919	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000666216.1	LINC01278-227	2862	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000609143.7	LINC01278-204	2816	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000669201.2	LINC01278-231	2780	No protein	-	lncRNA	-	-
ENST00000662689.2	LINC01278-220	2649	No protein	-	lncRNA	-	-
ENST00000761756.1	LINC01278-253	2645	No protein	-	lncRNA	-	-
ENST00000661141.1	LINC01278-218	2512	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656953.1	LINC01278-212	2501	No protein	-	lncRNA	-	-
ENST00000659222.1	LINC01278-215	2066	No protein	-	lncRNA	-	-
ENST00000664356.1	LINC01278-223	2047	No protein	-	lncRNA	-	-
ENST00000761744.1	LINC01278-241	2030	No protein	-	lncRNA	-	-
ENST00000654240.1	LINC01278-209	1978	No protein	-	lncRNA	-	-
ENST00000666437.1	LINC01278-228	1931	No protein	-	lncRNA	-	-
ENST00000665925.1	LINC01278-226	1847	No protein	-	lncRNA	-	-
ENST00000664128.1	LINC01278-222	1785	No protein	-	lncRNA	-	-
ENST00000670203.1	LINC01278-234	1771	No protein	-	lncRNA	-	-
ENST00000761753.1	LINC01278-250	1203	No protein	-	lncRNA	-	-
ENST00000701823.1	LINC01278-240	1181	No protein	-	lncRNA	-	-
ENST00000665386.1	LINC01278-224	1130	No protein	-	lncRNA	-	-
ENST00000761747.1	LINC01278-244	1129	No protein	-	lncRNA	-	-
ENST00000666891.1	LINC01278-229	1113	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670248.1	LINC01278-236	1086	No protein	-	lncRNA	-	-
ENST00000671338.2	LINC01278-239	1073	No protein	-	lncRNA	-	-
ENST00000761748.1	LINC01278-245	1043	No protein	-	lncRNA	-	-
ENST00000662779.1	LINC01278-221	1024	No protein	-	lncRNA	-	-
ENST00000761754.1	LINC01278-251	1007	No protein	-	lncRNA	-	-
ENST00000665831.2	LINC01278-225	984	No protein	-	lncRNA	-	-
ENST00000761745.1	LINC01278-242	964	No protein	-	lncRNA	-	-
ENST00000610088.6	LINC01278-206	943	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000761750.1	LINC01278-247	941	No protein	-	lncRNA	-	-
ENST00000761746.1	LINC01278-243	914	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659363.1	LINC01278-216	906	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000761751.1	LINC01278-248	904	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000761752.1	LINC01278-249	866	No protein	-	lncRNA	-	-
ENST00000659087.1	LINC01278-214	828	No protein	-	lncRNA	-	-
ENST00000670731.1	LINC01278-237	826	No protein	-	lncRNA	-	-
ENST00000669422.2	LINC01278-232	824	No protein	-	lncRNA	-	-
ENST00000761749.1	LINC01278-246	813	No protein	-	lncRNA	-	-
ENST00000654366.1	LINC01278-210	807	No protein	-	lncRNA	-	-
ENST00000669572.1	LINC01278-233	805	No protein	-	lncRNA	-	-
ENST00000659374.1	LINC01278-217	797	No protein	-	lncRNA	-	-
ENST00000608788.7	LINC01278-203	717	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000761755.1	LINC01278-252	685	No protein	-	lncRNA	-	-
ENST00000653861.1	LINC01278-208	559	No protein	-	lncRNA	-	-
ENST00000610234.5	LINC01278-207	555	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000433061.1	LINC01278-201	529	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 2,952 bps,

Version

ENST00000656972.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000656972.1 LINC01278-213

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Transcript: ENST00000656972.1 LINC01278-213

Summary

About Us

Get help

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