Transcript: ENST00000656652.1 PIRAT1-206

Description

PU.1 (SPI1) induced regulator of S100A8 and S100A9 alarmin transcription 1 [Source:HGNC Symbol;Acc:HGNC:37459]

Gene Synonyms

LINC00211, NCRNA00211, PIRAT

Location

Chromosome 2: 37,859,975-37,875,852 reverse strand.

About this transcript

This transcript has 3 exons and maps to 67 oligo probes.

Gene

This transcript is a product of gene ENSG00000237803.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000751985.1	PIRAT1-209	1085	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655948.2	PIRAT1-205	2130	No protein	-	lncRNA	-	-
ENST00000413792.5	PIRAT1-201	1923	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000751991.1	PIRAT1-215	1365	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000446799.7	PIRAT1-203	1281	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000752000.1	PIRAT1-224	1225	No protein	-	lncRNA	-	-
ENST00000751995.1	PIRAT1-219	1213	No protein	-	lncRNA	-	-
ENST00000418746.2	PIRAT1-202	1206	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000751998.1	PIRAT1-222	1175	No protein	-	lncRNA	-	-
ENST00000752011.1	PIRAT1-235	1138	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000751992.1	PIRAT1-216	1118	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000751993.1	PIRAT1-217	1110	No protein	-	lncRNA	-	-
ENST00000752018.1	PIRAT1-242	1110	No protein	-	lncRNA	-	-
ENST00000752014.1	PIRAT1-238	1052	No protein	-	lncRNA	-	-
ENST00000752012.1	PIRAT1-236	1046	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000751999.1	PIRAT1-223	1004	No protein	-	lncRNA	-	-
ENST00000752015.1	PIRAT1-239	987	No protein	-	lncRNA	-	-
ENST00000751986.1	PIRAT1-210	985	No protein	-	lncRNA	-	-
ENST00000752017.1	PIRAT1-241	964	No protein	-	lncRNA	-	-
ENST00000752013.1	PIRAT1-237	933	No protein	-	lncRNA	-	-
ENST00000751994.1	PIRAT1-218	852	No protein	-	lncRNA	-	-
ENST00000752001.1	PIRAT1-225	817	No protein	-	lncRNA	-	-
ENST00000751989.1	PIRAT1-213	802	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000751996.1	PIRAT1-220	799	No protein	-	lncRNA	-	-
ENST00000752010.1	PIRAT1-234	792	No protein	-	lncRNA	-	-
ENST00000752003.1	PIRAT1-227	768	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000752005.1	PIRAT1-229	765	No protein	-	lncRNA	-	-
ENST00000752008.1	PIRAT1-232	738	No protein	-	lncRNA	-	-
ENST00000656652.1	PIRAT1-206	731	No protein	-	lncRNA	-	-
ENST00000751990.1	PIRAT1-214	709	No protein	-	lncRNA	-	-
ENST00000752009.1	PIRAT1-233	685	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659701.1	PIRAT1-207	671	No protein	-	lncRNA	-	-
ENST00000751988.1	PIRAT1-212	661	No protein	-	lncRNA	-	-
ENST00000752007.1	PIRAT1-231	610	No protein	-	lncRNA	-	-
ENST00000655678.1	PIRAT1-204	597	No protein	-	lncRNA	-	-
ENST00000667610.2	PIRAT1-208	592	No protein	-	lncRNA	-	-
ENST00000751987.1	PIRAT1-211	580	No protein	-	lncRNA	-	-
ENST00000752002.1	PIRAT1-226	569	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000752006.1	PIRAT1-230	568	No protein	-	lncRNA	-	-
ENST00000751997.1	PIRAT1-221	561	No protein	-	lncRNA	-	-
ENST00000752016.1	PIRAT1-240	415	No protein	-	lncRNA	-	-
ENST00000752004.1	PIRAT1-228	361	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 731 bps,

Version

ENST00000656652.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000656652.1 PIRAT1-206

Summary

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Transcript: ENST00000656652.1 PIRAT1-206

Summary

About Us

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