Transcript: ENST00000656514.2 LINC01849-204

Description

long intergenic non-protein coding RNA 1849 [Source:HGNC Symbol;Acc:HGNC:52665]

Location

Chromosome 2: 100,607,069-100,611,542 forward strand.

About this transcript

This transcript has 2 exons and maps to 196 oligo probes.

Gene

This transcript is a product of gene ENSG00000234988.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000656519.2	LINC01849-205	891	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000656514.2	LINC01849-204	2797	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000691688.2	LINC01849-206	1593	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000700776.2	LINC01849-207	1362	No protein	-	lncRNA	-	-
ENST00000732321.1	LINC01849-209	1259	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000732320.1	LINC01849-208	1053	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000424342.2	LINC01849-202	678	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000732324.1	LINC01849-212	608	No protein	-	lncRNA	-	-
ENST00000732322.1	LINC01849-210	582	No protein	-	lncRNA	-	-
ENST00000656412.1	LINC01849-203	574	No protein	-	lncRNA	-	-
ENST00000732327.1	LINC01849-215	518	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000414647.1	LINC01849-201	517	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000732323.1	LINC01849-211	452	No protein	-	lncRNA	-	-
ENST00000732326.1	LINC01849-214	394	No protein	-	lncRNA	-	-
ENST00000732325.1	LINC01849-213	305	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 2,797 bps,

Version

ENST00000656514.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000656514.2 LINC01849-204

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Transcript: ENST00000656514.2 LINC01849-204

Summary

About Us

Get help

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