Transcript: ENST00000655593.1 LINC00639-209

Description

long intergenic non-protein coding RNA 639 [Source:HGNC Symbol;Acc:HGNC:27502]

Location

Chromosome 14: 38,738,155-38,837,511 reverse strand.

About this transcript

This transcript has 9 exons and maps to 340 oligo probes.

Gene

This transcript is a product of gene ENSG00000259070.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000658492.2	LINC00639-210	5792	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000670347.1	LINC00639-213	5418	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000653832.1	LINC00639-207	4982	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654295.2	LINC00639-208	4856	No protein	-	lncRNA	-	-
ENST00000553932.5	LINC00639-201	4496	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000554732.5	LINC00639-202	4364	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000557440.2	LINC00639-205	3902	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000655593.1	LINC00639-209	3711	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000702408.2	LINC00639-217	1989	No protein	-	lncRNA	-	-
ENST00000670844.1	LINC00639-214	1764	No protein	-	lncRNA	-	-
ENST00000671669.1	LINC00639-215	1599	No protein	-	lncRNA	-	-
ENST00000776590.1	LINC00639-225	1381	No protein	-	lncRNA	-	-
ENST00000556116.2	LINC00639-203	1344	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000669541.1	LINC00639-212	1279	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000776583.1	LINC00639-218	1178	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000701548.1	LINC00639-216	1076	No protein	-	lncRNA	-	-
ENST00000557019.6	LINC00639-204	972	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000776587.1	LINC00639-222	832	No protein	-	lncRNA	-	-
ENST00000776588.1	LINC00639-223	809	No protein	-	lncRNA	-	-
ENST00000776596.1	LINC00639-231	805	No protein	-	lncRNA	-	-
ENST00000776585.1	LINC00639-220	795	No protein	-	lncRNA	-	-
ENST00000650718.1	LINC00639-206	783	No protein	-	lncRNA	-	-
ENST00000776586.1	LINC00639-221	779	No protein	-	lncRNA	-	-
ENST00000776591.1	LINC00639-226	766	No protein	-	lncRNA	-	-
ENST00000776584.1	LINC00639-219	725	No protein	-	lncRNA	-	-
ENST00000776597.1	LINC00639-232	652	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668589.2	LINC00639-211	604	No protein	-	lncRNA	-	-
ENST00000776592.1	LINC00639-227	467	No protein	-	lncRNA	-	-
ENST00000776589.1	LINC00639-224	453	No protein	-	lncRNA	-	-
ENST00000776595.1	LINC00639-230	444	No protein	-	lncRNA	-	-
ENST00000776593.1	LINC00639-228	407	No protein	-	lncRNA	-	-
ENST00000776594.1	LINC00639-229	393	No protein	-	lncRNA	-	-
ENST00000776598.1	LINC00639-233	263	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 9, Coding exons: 0, Transcript length: 3,711 bps,

Version

ENST00000655593.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000655593.1 LINC00639-209

Summary

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Transcript: ENST00000655593.1 LINC00639-209

Summary

About Us

Get help

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