Transcript: ENST00000655186.1 LINC00879-212

Description

long intergenic non-protein coding RNA 879 [Source:HGNC Symbol;Acc:HGNC:48566]

Location

Chromosome 3: 94,938,281-94,991,330 forward strand.

About this transcript

This transcript has 9 exons and maps to 360 oligo probes.

Gene

This transcript is a product of gene ENSG00000239589.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000665896.2	LINC00879-232	1525	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656113.1	LINC00879-216	1763	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000661499.1	LINC00879-223	1460	No protein	-	lncRNA	-	-
ENST00000660677.1	LINC00879-221	1322	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670450.1	LINC00879-237	1296	No protein	-	lncRNA	-	-
ENST00000658118.1	LINC00879-219	1200	No protein	-	lncRNA	-	-
ENST00000655102.1	LINC00879-211	1183	No protein	-	lncRNA	-	-
ENST00000665486.1	LINC00879-230	1174	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000664338.2	LINC00879-226	1161	No protein	-	lncRNA	-	-
ENST00000462219.6	LINC00879-201	1161	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000665609.1	LINC00879-231	1146	No protein	-	lncRNA	-	-
ENST00000668707.1	LINC00879-236	1133	No protein	-	lncRNA	-	-
ENST00000665306.1	LINC00879-229	1085	No protein	-	lncRNA	-	-
ENST00000666801.1	LINC00879-233	1082	No protein	-	lncRNA	-	-
ENST00000463200.6	LINC00879-202	1065	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000652877.1	LINC00879-207	1058	No protein	-	lncRNA	-	-
ENST00000660887.1	LINC00879-222	1050	No protein	-	lncRNA	-	-
ENST00000651942.1	LINC00879-206	1044	No protein	-	lncRNA	-	-
ENST00000655431.1	LINC00879-214	1043	No protein	-	lncRNA	-	-
ENST00000668600.1	LINC00879-235	1029	No protein	-	lncRNA	-	-
ENST00000655186.1	LINC00879-212	1027	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000663893.1	LINC00879-225	1024	No protein	-	lncRNA	-	-
ENST00000655052.1	LINC00879-210	1022	No protein	-	lncRNA	-	-
ENST00000654564.1	LINC00879-209	1021	No protein	-	lncRNA	-	-
ENST00000660591.1	LINC00879-220	973	No protein	-	lncRNA	-	-
ENST00000665152.1	LINC00879-228	965	No protein	-	lncRNA	-	-
ENST00000466560.2	LINC00879-204	908	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000671623.1	LINC00879-238	884	No protein	-	lncRNA	-	-
ENST00000657041.1	LINC00879-218	874	No protein	-	lncRNA	-	-
ENST00000812792.1	LINC00879-244	873	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000812791.1	LINC00879-243	868	No protein	-	lncRNA	-	-
ENST00000655736.1	LINC00879-215	852	No protein	-	lncRNA	-	-
ENST00000470465.1	LINC00879-205	757	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000812787.1	LINC00879-239	736	No protein	-	lncRNA	-	-
ENST00000812788.1	LINC00879-240	725	No protein	-	lncRNA	-	-
ENST00000668435.1	LINC00879-234	702	No protein	-	lncRNA	-	-
ENST00000664608.1	LINC00879-227	649	No protein	-	lncRNA	-	-
ENST00000466089.5	LINC00879-203	631	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000662343.1	LINC00879-224	607	No protein	-	lncRNA	-	-
ENST00000812790.1	LINC00879-242	593	No protein	-	lncRNA	-	-
ENST00000812796.1	LINC00879-248	589	No protein	-	lncRNA	-	-
ENST00000656651.1	LINC00879-217	578	No protein	-	lncRNA	-	-
ENST00000812794.1	LINC00879-246	555	No protein	-	lncRNA	-	-
ENST00000812797.1	LINC00879-249	504	No protein	-	lncRNA	-	-
ENST00000655395.1	LINC00879-213	491	No protein	-	lncRNA	-	-
ENST00000652962.1	LINC00879-208	476	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000812793.1	LINC00879-245	468	No protein	-	lncRNA	-	-
ENST00000812795.1	LINC00879-247	462	No protein	-	lncRNA	-	-
ENST00000812789.1	LINC00879-241	394	No protein	-	lncRNA	-	-
ENST00000812798.1	LINC00879-250	330	No protein	-	lncRNA	-	-
ENST00000812799.1	LINC00879-251	313	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 9, Coding exons: 0, Transcript length: 1,027 bps,

Version

ENST00000655186.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000655186.1 LINC00879-212

Summary

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Transcript: ENST00000655186.1 LINC00879-212

Summary

About Us

Get help

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