Transcript: ENST00000655121.1 LINC01539-214

Description

long intergenic non-protein coding RNA 1539 [Source:HGNC Symbol;Acc:HGNC:51307]

Location

Chromosome 18: 56,083,363-56,137,306 reverse strand.

About this transcript

This transcript has 8 exons and maps to 295 oligo probes.

Gene

This transcript is a product of gene ENSG00000267712.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000382897.2	LINC01539-201	2558	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000587904.5	LINC01539-202	2068	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000589617.2	LINC01539-205	1994	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000666910.1	LINC01539-231	1893	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000591974.5	LINC01539-208	1884	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000657412.1	LINC01539-218	1838	No protein	-	lncRNA	-	-
ENST00000765137.1	LINC01539-270	1811	No protein	-	lncRNA	-	-
ENST00000650203.1	LINC01539-210	1805	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000714785.1	LINC01539-241	1768	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670613.1	LINC01539-236	1749	No protein	-	lncRNA	-	-
ENST00000656570.1	LINC01539-216	1704	No protein	-	lncRNA	-	-
ENST00000660365.1	LINC01539-219	1681	No protein	-	lncRNA	-	-
ENST00000589293.6	LINC01539-203	1668	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000765114.1	LINC01539-247	1648	No protein	-	lncRNA	-	-
ENST00000665833.2	LINC01539-230	1646	No protein	-	lncRNA	-	-
ENST00000664250.1	LINC01539-226	1640	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656913.1	LINC01539-217	1594	No protein	-	lncRNA	-	-
ENST00000661430.1	LINC01539-221	1573	No protein	-	lncRNA	-	-
ENST00000655121.1	LINC01539-214	1558	No protein	-	lncRNA	-	-
ENST00000765118.1	LINC01539-251	1511	No protein	-	lncRNA	-	-
ENST00000671420.1	LINC01539-238	1479	No protein	-	lncRNA	-	-
ENST00000654820.1	LINC01539-213	1476	No protein	-	lncRNA	-	-
ENST00000653652.1	LINC01539-212	1474	No protein	-	lncRNA	-	-
ENST00000765116.1	LINC01539-249	1468	No protein	-	lncRNA	-	-
ENST00000765120.1	LINC01539-253	1463	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000671257.1	LINC01539-237	1461	No protein	-	lncRNA	-	-
ENST00000765121.1	LINC01539-254	1425	No protein	-	lncRNA	-	-
ENST00000664576.1	LINC01539-227	1401	No protein	-	lncRNA	-	-
ENST00000665019.1	LINC01539-229	1383	No protein	-	lncRNA	-	-
ENST00000655648.1	LINC01539-215	1369	No protein	-	lncRNA	-	-
ENST00000653524.1	LINC01539-211	1358	No protein	-	lncRNA	-	-
ENST00000590484.2	LINC01539-207	1348	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000765117.1	LINC01539-250	1341	No protein	-	lncRNA	-	-
ENST00000671483.1	LINC01539-239	1337	No protein	-	lncRNA	-	-
ENST00000664842.1	LINC01539-228	1320	No protein	-	lncRNA	-	-
ENST00000663100.1	LINC01539-225	1308	No protein	-	lncRNA	-	-
ENST00000662269.1	LINC01539-222	1270	No protein	-	lncRNA	-	-
ENST00000668690.1	LINC01539-233	1258	No protein	-	lncRNA	-	-
ENST00000671593.1	LINC01539-240	1219	No protein	-	lncRNA	-	-
ENST00000765119.1	LINC01539-252	1218	No protein	-	lncRNA	-	-
ENST00000662735.1	LINC01539-224	1200	No protein	-	lncRNA	-	-
ENST00000715823.1	LINC01539-242	1156	No protein	-	lncRNA	-	-
ENST00000765111.1	LINC01539-244	1129	No protein	-	lncRNA	-	-
ENST00000662324.1	LINC01539-223	1093	No protein	-	lncRNA	-	-
ENST00000765124.1	LINC01539-257	1082	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000765115.1	LINC01539-248	1078	No protein	-	lncRNA	-	-
ENST00000669575.1	LINC01539-234	1070	No protein	-	lncRNA	-	-
ENST00000765110.1	LINC01539-243	1058	No protein	-	lncRNA	-	-
ENST00000765125.1	LINC01539-258	974	No protein	-	lncRNA	-	-
ENST00000670316.1	LINC01539-235	862	No protein	-	lncRNA	-	-
ENST00000765134.1	LINC01539-267	822	No protein	-	lncRNA	-	-
ENST00000765136.1	LINC01539-269	815	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000765123.1	LINC01539-256	773	No protein	-	lncRNA	-	-
ENST00000765112.1	LINC01539-245	750	No protein	-	lncRNA	-	-
ENST00000668386.2	LINC01539-232	742	No protein	-	lncRNA	-	-
ENST00000765132.1	LINC01539-265	726	No protein	-	lncRNA	-	-
ENST00000660685.2	LINC01539-220	695	No protein	-	lncRNA	-	-
ENST00000765133.1	LINC01539-266	690	No protein	-	lncRNA	-	-
ENST00000593282.5	LINC01539-209	678	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000765135.1	LINC01539-268	664	No protein	-	lncRNA	-	-
ENST00000765130.1	LINC01539-263	663	No protein	-	lncRNA	-	-
ENST00000765131.1	LINC01539-264	660	No protein	-	lncRNA	-	-
ENST00000765122.1	LINC01539-255	632	No protein	-	lncRNA	-	-
ENST00000765127.1	LINC01539-260	623	No protein	-	lncRNA	-	-
ENST00000589447.1	LINC01539-204	575	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000765129.1	LINC01539-262	570	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000765113.1	LINC01539-246	569	No protein	-	lncRNA	-	-
ENST00000589754.1	LINC01539-206	555	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000765128.1	LINC01539-261	532	No protein	-	lncRNA	-	-
ENST00000765139.1	LINC01539-272	530	No protein	-	lncRNA	-	-
ENST00000765126.1	LINC01539-259	498	No protein	-	lncRNA	-	-
ENST00000765138.1	LINC01539-271	477	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 8, Coding exons: 0, Transcript length: 1,558 bps,

Version

ENST00000655121.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000655121.1 LINC01539-214

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Transcript: ENST00000655121.1 LINC01539-214

Summary

About Us

Get help

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