Transcript: ENST00000654906.1

Description

long intergenic non-protein coding RNA 1033

Location

Chromosome 5: 54,313,596-54,415,123 forward strand.

About this transcript

This transcript has 4 exons and maps to 87 oligo probes.

Gene

This transcript is a product of gene ENSG00000293676.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000717686.1	-	1336	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658828.1	-	2509	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000657771.1	-	1555	No protein	-	lncRNA	-	-
ENST00000717684.1	-	1369	No protein	-	lncRNA	-	-
ENST00000793158.1	-	1323	No protein	-	lncRNA	-	-
ENST00000717683.1	-	1263	No protein	-	lncRNA	-	-
ENST00000793162.1	-	1253	No protein	-	lncRNA	-	-
ENST00000717685.1	-	1251	No protein	-	lncRNA	-	-
ENST00000659703.1	-	1191	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717682.1	-	1117	No protein	-	lncRNA	-	-
ENST00000690911.3	-	1058	No protein	-	lncRNA	-	-
ENST00000653566.1	-	949	No protein	-	lncRNA	-	-
ENST00000662351.1	-	937	No protein	-	lncRNA	-	-
ENST00000665869.1	-	891	No protein	-	lncRNA	-	-
ENST00000667992.1	-	841	No protein	-	lncRNA	-	-
ENST00000523194.7	-	837	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000664079.1	-	765	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655801.1	-	763	No protein	-	lncRNA	-	-
ENST00000665899.1	-	754	No protein	-	lncRNA	-	-
ENST00000670528.1	-	744	No protein	-	lncRNA	-	-
ENST00000504609.3	-	735	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000512618.6	-	622	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000667636.2	-	615	No protein	-	lncRNA	-	-
ENST00000665795.1	-	603	No protein	-	lncRNA	-	-
ENST00000793161.1	-	563	No protein	-	lncRNA	-	-
ENST00000717688.1	-	559	No protein	-	lncRNA	-	-
ENST00000793160.1	-	547	No protein	-	lncRNA	-	-
ENST00000717687.1	-	538	No protein	-	lncRNA	-	-
ENST00000793159.1	-	507	No protein	-	lncRNA	-	-
ENST00000654906.1	-	409	No protein	-	lncRNA	-	-
ENST00000657274.1	-	392	No protein	-	lncRNA	-	-
ENST00000517934.1	-	306	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 409 bps,

Version

ENST00000654906.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000654906.1

Summary

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Transcript: ENST00000654906.1

Summary

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