Transcript: ENST00000653509.1 DUBR-208

Description

DPPA2 upstream binding RNA [Source:HGNC Symbol;Acc:HGNC:48569]

Gene Synonyms

LINC00883

Location

Chromosome 3: 107,240,718-107,294,918 forward strand.

About this transcript

This transcript has 4 exons and maps to 165 oligo probes.

Gene

This transcript is a product of gene ENSG00000243701.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000715947.1	DUBR-234	894	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000660597.1	DUBR-217	5519	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000669523.1	DUBR-230	3705	No protein	-	lncRNA	-	-
ENST00000663366.1	DUBR-219	3656	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000663370.1	DUBR-220	3606	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000667856.1	DUBR-229	3184	No protein	-	lncRNA	-	-
ENST00000466734.6	DUBR-202	2631	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000667411.2	DUBR-223	1910	No protein	-	lncRNA	-	-
ENST00000658510.1	DUBR-213	1741	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000653509.1	DUBR-208	1682	No protein	-	lncRNA	-	-
ENST00000667603.1	DUBR-225	1669	No protein	-	lncRNA	-	-
ENST00000662418.1	DUBR-218	1477	No protein	-	lncRNA	-	-
ENST00000490441.1	DUBR-204	1149	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000670833.1	DUBR-232	1130	No protein	-	lncRNA	-	-
ENST00000667710.1	DUBR-228	1122	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000667634.1	DUBR-227	1113	No protein	-	lncRNA	-	-
ENST00000654269.1	DUBR-209	1103	No protein	-	lncRNA	-	-
ENST00000659955.1	DUBR-215	1099	No protein	-	lncRNA	-	-
ENST00000653298.1	DUBR-207	1038	No protein	-	lncRNA	-	-
ENST00000655772.1	DUBR-210	1033	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659830.1	DUBR-214	1020	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000657581.1	DUBR-212	971	No protein	-	lncRNA	-	-
ENST00000669723.1	DUBR-231	967	No protein	-	lncRNA	-	-
ENST00000660575.1	DUBR-216	952	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000715948.1	DUBR-235	934	No protein	-	lncRNA	-	-
ENST00000667620.1	DUBR-226	928	No protein	-	lncRNA	-	-
ENST00000651804.1	DUBR-206	924	No protein	-	lncRNA	-	-
ENST00000666345.1	DUBR-222	922	No protein	-	lncRNA	-	-
ENST00000665694.1	DUBR-221	877	No protein	-	lncRNA	-	-
ENST00000657097.1	DUBR-211	868	No protein	-	lncRNA	-	-
ENST00000463143.5	DUBR-201	801	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000495228.2	DUBR-205	788	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000473550.1	DUBR-203	738	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000671419.1	DUBR-233	630	No protein	-	lncRNA	-	-
ENST00000667442.1	DUBR-224	591	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,682 bps,

Version

ENST00000653509.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000653509.1 DUBR-208

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Transcript: ENST00000653509.1 DUBR-208

Summary

About Us

Get help

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