Transcript: ENST00000653412.1 LINC01193-207

Description

long intergenic non-protein coding RNA 1193 [Source:HGNC Symbol;Acc:HGNC:28003]

Gene Synonyms

CT60, LOC348120

Location

Chromosome 15: 20,979,047-21,049,192 forward strand.

About this transcript

This transcript has 3 exons and maps to 157 oligo probes.

Gene

This transcript is a product of gene ENSG00000258710.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000664036.1	LINC01193-224	490	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000553416.5	LINC01193-201	3401	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000665683.1	LINC01193-227	2117	No protein	-	lncRNA	-	-
ENST00000775522.1	LINC01193-236	1953	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654677.1	LINC01193-211	1906	No protein	-	lncRNA	-	-
ENST00000775527.1	LINC01193-241	1856	No protein	-	lncRNA	-	-
ENST00000668544.1	LINC01193-231	1794	No protein	-	lncRNA	-	-
ENST00000657529.1	LINC01193-213	1688	No protein	-	lncRNA	-	-
ENST00000670237.1	LINC01193-234	1685	No protein	-	lncRNA	-	-
ENST00000775526.1	LINC01193-240	1676	No protein	-	lncRNA	-	-
ENST00000775528.1	LINC01193-242	1667	No protein	-	lncRNA	-	-
ENST00000658496.1	LINC01193-214	1491	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000653373.1	LINC01193-206	1476	No protein	-	lncRNA	-	-
ENST00000662062.2	LINC01193-221	1329	No protein	-	lncRNA	-	-
ENST00000665633.1	LINC01193-226	1326	No protein	-	lncRNA	-	-
ENST00000660153.1	LINC01193-217	1263	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000775553.1	LINC01193-267	1215	No protein	-	lncRNA	-	-
ENST00000665454.1	LINC01193-225	1201	No protein	-	lncRNA	-	-
ENST00000666174.1	LINC01193-228	1175	No protein	-	lncRNA	-	-
ENST00000666366.1	LINC01193-229	1173	No protein	-	lncRNA	-	-
ENST00000775531.1	LINC01193-245	1169	No protein	-	lncRNA	-	-
ENST00000659492.1	LINC01193-215	1124	No protein	-	lncRNA	-	-
ENST00000663648.1	LINC01193-223	1122	No protein	-	lncRNA	-	-
ENST00000661454.2	LINC01193-219	1090	No protein	-	lncRNA	-	-
ENST00000557312.7	LINC01193-204	1062	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000659808.1	LINC01193-216	1043	No protein	-	lncRNA	-	-
ENST00000775524.1	LINC01193-238	998	No protein	-	lncRNA	-	-
ENST00000775525.1	LINC01193-239	994	No protein	-	lncRNA	-	-
ENST00000567916.3	LINC01193-205	984	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000653450.1	LINC01193-208	965	No protein	-	lncRNA	-	-
ENST00000775523.1	LINC01193-237	954	No protein	-	lncRNA	-	-
ENST00000654471.1	LINC01193-210	911	No protein	-	lncRNA	-	-
ENST00000775533.1	LINC01193-247	909	No protein	-	lncRNA	-	-
ENST00000670349.2	LINC01193-235	905	No protein	-	lncRNA	-	-
ENST00000669291.1	LINC01193-232	878	No protein	-	lncRNA	-	-
ENST00000668088.1	LINC01193-230	835	No protein	-	lncRNA	-	-
ENST00000670123.1	LINC01193-233	808	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000660895.1	LINC01193-218	799	No protein	-	lncRNA	-	-
ENST00000775539.1	LINC01193-253	796	No protein	-	lncRNA	-	-
ENST00000661835.2	LINC01193-220	790	No protein	-	lncRNA	-	-
ENST00000775535.1	LINC01193-249	775	No protein	-	lncRNA	-	-
ENST00000775547.1	LINC01193-261	768	No protein	-	lncRNA	-	-
ENST00000775532.1	LINC01193-246	756	No protein	-	lncRNA	-	-
ENST00000775551.1	LINC01193-265	723	No protein	-	lncRNA	-	-
ENST00000775543.1	LINC01193-257	709	No protein	-	lncRNA	-	-
ENST00000775529.1	LINC01193-243	692	No protein	-	lncRNA	-	-
ENST00000775545.1	LINC01193-259	687	No protein	-	lncRNA	-	-
ENST00000775538.1	LINC01193-252	673	No protein	-	lncRNA	-	-
ENST00000775548.1	LINC01193-262	661	No protein	-	lncRNA	-	-
ENST00000775530.1	LINC01193-244	659	No protein	-	lncRNA	-	-
ENST00000554817.6	LINC01193-203	659	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000775546.1	LINC01193-260	640	No protein	-	lncRNA	-	-
ENST00000775541.1	LINC01193-255	607	No protein	-	lncRNA	-	-
ENST00000775552.1	LINC01193-266	599	No protein	-	lncRNA	-	-
ENST00000663152.1	LINC01193-222	593	No protein	-	lncRNA	-	-
ENST00000653673.2	LINC01193-209	580	No protein	-	lncRNA	-	-
ENST00000775540.1	LINC01193-254	572	No protein	-	lncRNA	-	-
ENST00000554209.2	LINC01193-202	568	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000775549.1	LINC01193-263	555	No protein	-	lncRNA	-	-
ENST00000775544.1	LINC01193-258	534	No protein	-	lncRNA	-	-
ENST00000775536.1	LINC01193-250	475	No protein	-	lncRNA	-	-
ENST00000775534.1	LINC01193-248	470	No protein	-	lncRNA	-	-
ENST00000653412.1	LINC01193-207	463	No protein	-	lncRNA	-	-
ENST00000775537.1	LINC01193-251	436	No protein	-	lncRNA	-	-
ENST00000775554.1	LINC01193-268	436	No protein	-	lncRNA	-	-
ENST00000775542.1	LINC01193-256	361	No protein	-	lncRNA	-	-
ENST00000775550.1	LINC01193-264	338	No protein	-	lncRNA	-	-
ENST00000655788.1	LINC01193-212	293	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 463 bps,

Version

ENST00000653412.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000653412.1 LINC01193-207

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Transcript: ENST00000653412.1 LINC01193-207

Summary

About Us

Get help

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