Transcript: ENST00000653266.2 LINC01013-213

Description

long intergenic non-protein coding RNA 1013 [Source:HGNC Symbol;Acc:HGNC:48987]

Gene Synonyms

AERRIE, LINC01013ORF, LINC02921

Location

Chromosome 6: 132,147,780-132,169,368 forward strand.

About this transcript

This transcript has 4 exons and maps to 193 oligo probes.

Gene

This transcript is a product of gene ENSG00000228495.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000706336.1	LINC01013-273	515	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000706323.1	LINC01013-260	2650	No protein	-	lncRNA	-	-
ENST00000706296.2	LINC01013-243	2312	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000454596.2	LINC01013-210	2306	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000706329.1	LINC01013-266	2137	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658894.3	LINC01013-220	2018	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000706345.1	LINC01013-282	1964	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000422700.2	LINC01013-203	1835	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000706344.1	LINC01013-281	1814	No protein	-	lncRNA	-	-
ENST00000458028.2	LINC01013-211	1742	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000773262.1	LINC01013-298	1678	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000706332.1	LINC01013-269	1613	No protein	-	lncRNA	-	-
ENST00000773271.1	LINC01013-307	1581	No protein	-	lncRNA	-	-
ENST00000706308.1	LINC01013-247	1548	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000447481.2	LINC01013-209	1518	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000622916.1	LINC01013-212	1337	No protein	-	lncRNA	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000706349.1	LINC01013-286	1316	No protein	-	lncRNA	-	-
ENST00000662166.1	LINC01013-226	1313	No protein	-	lncRNA	-	-
ENST00000706312.1	LINC01013-251	1306	No protein	-	lncRNA	-	-
ENST00000661099.2	LINC01013-224	1281	No protein	-	lncRNA	-	-
ENST00000706306.1	LINC01013-245	1251	No protein	-	lncRNA	-	-
ENST00000670122.1	LINC01013-240	1227	No protein	-	lncRNA	-	-
ENST00000773279.1	LINC01013-315	1175	No protein	-	lncRNA	-	-
ENST00000706342.1	LINC01013-279	1170	No protein	-	lncRNA	-	-
ENST00000706313.1	LINC01013-252	1148	No protein	-	lncRNA	-	-
ENST00000654779.1	LINC01013-214	1142	No protein	-	lncRNA	-	-
ENST00000662967.1	LINC01013-227	1134	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000706327.1	LINC01013-264	1116	No protein	-	lncRNA	-	-
ENST00000706307.2	LINC01013-246	1110	No protein	-	lncRNA	-	-
ENST00000655844.1	LINC01013-216	1063	No protein	-	lncRNA	-	-
ENST00000706330.1	LINC01013-267	1062	No protein	-	lncRNA	-	-
ENST00000657473.2	LINC01013-218	1024	No protein	-	lncRNA	-	-
ENST00000665843.1	LINC01013-231	1016	No protein	-	lncRNA	-	-
ENST00000660563.1	LINC01013-222	1016	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000706295.1	LINC01013-242	998	No protein	-	lncRNA	-	-
ENST00000773263.1	LINC01013-299	992	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000706322.1	LINC01013-259	988	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000664113.1	LINC01013-230	978	No protein	-	lncRNA	-	-
ENST00000706351.1	LINC01013-288	967	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000663205.1	LINC01013-228	964	No protein	-	lncRNA	-	-
ENST00000661280.2	LINC01013-225	963	No protein	-	lncRNA	-	-
ENST00000706324.1	LINC01013-261	959	No protein	-	lncRNA	-	-
ENST00000706328.1	LINC01013-265	946	No protein	-	lncRNA	-	-
ENST00000669653.1	LINC01013-239	944	No protein	-	lncRNA	-	-
ENST00000773284.1	LINC01013-320	944	No protein	-	lncRNA	-	-
ENST00000440246.2	LINC01013-207	941	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000669240.2	LINC01013-237	940	No protein	-	lncRNA	-	-
ENST00000773275.1	LINC01013-311	930	No protein	-	lncRNA	-	-
ENST00000706358.2	LINC01013-295	925	No protein	-	lncRNA	-	-
ENST00000706316.1	LINC01013-255	922	No protein	-	lncRNA	-	-
ENST00000773291.1	LINC01013-327	920	No protein	-	lncRNA	-	-
ENST00000706352.1	LINC01013-289	901	No protein	-	lncRNA	-	-
ENST00000706350.1	LINC01013-287	881	No protein	-	lncRNA	-	-
ENST00000706314.1	LINC01013-253	881	No protein	-	lncRNA	-	-
ENST00000706359.1	LINC01013-296	871	No protein	-	lncRNA	-	-
ENST00000773264.1	LINC01013-300	867	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000706311.1	LINC01013-250	846	No protein	-	lncRNA	-	-
ENST00000667763.1	LINC01013-235	842	No protein	-	lncRNA	-	-
ENST00000706317.1	LINC01013-256	842	No protein	-	lncRNA	-	-
ENST00000706315.2	LINC01013-254	837	No protein	-	lncRNA	-	-
ENST00000660058.1	LINC01013-221	835	No protein	-	lncRNA	-	-
ENST00000773281.1	LINC01013-317	833	No protein	-	lncRNA	-	-
ENST00000668744.1	LINC01013-236	832	No protein	-	lncRNA	-	-
ENST00000773265.1	LINC01013-301	827	No protein	-	lncRNA	-	-
ENST00000655558.1	LINC01013-215	826	No protein	-	lncRNA	-	-
ENST00000773286.1	LINC01013-322	814	No protein	-	lncRNA	-	-
ENST00000706348.1	LINC01013-285	809	No protein	-	lncRNA	-	-
ENST00000706294.2	LINC01013-241	808	No protein	-	lncRNA	-	-
ENST00000669461.1	LINC01013-238	807	No protein	-	lncRNA	-	-
ENST00000656169.1	LINC01013-217	805	No protein	-	lncRNA	-	-
ENST00000706354.1	LINC01013-291	786	No protein	-	lncRNA	-	-
ENST00000706326.1	LINC01013-263	785	No protein	-	lncRNA	-	-
ENST00000773278.1	LINC01013-314	781	No protein	-	lncRNA	-	-
ENST00000706346.2	LINC01013-283	779	No protein	-	lncRNA	-	-
ENST00000706325.2	LINC01013-262	778	No protein	-	lncRNA	-	-
ENST00000658258.1	LINC01013-219	774	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000773292.1	LINC01013-328	769	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000430428.2	LINC01013-204	764	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000435287.2	LINC01013-205	759	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000706353.1	LINC01013-290	751	No protein	-	lncRNA	-	-
ENST00000706356.2	LINC01013-293	751	No protein	-	lncRNA	-	-
ENST00000706310.1	LINC01013-249	749	No protein	-	lncRNA	-	-
ENST00000706341.2	LINC01013-278	738	No protein	-	lncRNA	-	-
ENST00000421310.6	LINC01013-202	727	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000706309.1	LINC01013-248	726	No protein	-	lncRNA	-	-
ENST00000773280.1	LINC01013-316	717	No protein	-	lncRNA	-	-
ENST00000706337.2	LINC01013-274	716	No protein	-	lncRNA	-	-
ENST00000773266.1	LINC01013-302	716	No protein	-	lncRNA	-	-
ENST00000653266.2	LINC01013-213	703	No protein	-	lncRNA	-	-
ENST00000773297.1	LINC01013-333	703	No protein	-	lncRNA	-	-
ENST00000773282.1	LINC01013-318	700	No protein	-	lncRNA	-	-
ENST00000660939.1	LINC01013-223	698	No protein	-	lncRNA	-	-
ENST00000773270.1	LINC01013-306	698	No protein	-	lncRNA	-	-
ENST00000706334.1	LINC01013-271	688	No protein	-	lncRNA	-	-
ENST00000419695.2	LINC01013-201	684	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000773261.1	LINC01013-297	678	No protein	-	lncRNA	-	-
ENST00000773296.1	LINC01013-332	674	No protein	-	lncRNA	-	-
ENST00000773285.1	LINC01013-321	669	No protein	-	lncRNA	-	-
ENST00000773294.1	LINC01013-330	667	No protein	-	lncRNA	-	-
ENST00000773272.1	LINC01013-308	666	No protein	-	lncRNA	-	-
ENST00000706340.2	LINC01013-277	663	No protein	-	lncRNA	-	-
ENST00000706333.1	LINC01013-270	644	No protein	-	lncRNA	-	-
ENST00000664107.1	LINC01013-229	639	No protein	-	lncRNA	-	-
ENST00000706331.1	LINC01013-268	637	No protein	-	lncRNA	-	-
ENST00000706357.1	LINC01013-294	637	No protein	-	lncRNA	-	-
ENST00000773298.1	LINC01013-334	637	No protein	-	lncRNA	-	-
ENST00000706355.1	LINC01013-292	633	No protein	-	lncRNA	-	-
ENST00000706335.1	LINC01013-272	629	No protein	-	lncRNA	-	-
ENST00000706319.1	LINC01013-258	628	No protein	-	lncRNA	-	-
ENST00000666171.1	LINC01013-232	626	No protein	-	lncRNA	-	-
ENST00000773268.1	LINC01013-304	625	No protein	-	lncRNA	-	-
ENST00000706347.1	LINC01013-284	621	No protein	-	lncRNA	-	-
ENST00000773267.1	LINC01013-303	621	No protein	-	lncRNA	-	-
ENST00000773295.1	LINC01013-331	613	No protein	-	lncRNA	-	-
ENST00000773290.1	LINC01013-326	612	No protein	-	lncRNA	-	-
ENST00000773288.1	LINC01013-324	603	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000706343.1	LINC01013-280	597	No protein	-	lncRNA	-	-
ENST00000706318.1	LINC01013-257	586	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000773269.1	LINC01013-305	579	No protein	-	lncRNA	-	-
ENST00000773273.1	LINC01013-309	579	No protein	-	lncRNA	-	-
ENST00000706305.1	LINC01013-244	564	No protein	-	lncRNA	-	-
ENST00000706338.1	LINC01013-275	562	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000443303.4	LINC01013-208	557	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000706339.1	LINC01013-276	553	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000666560.1	LINC01013-233	538	No protein	-	lncRNA	-	-
ENST00000773274.1	LINC01013-310	529	No protein	-	lncRNA	-	-
ENST00000773289.1	LINC01013-325	528	No protein	-	lncRNA	-	-
ENST00000667512.1	LINC01013-234	513	No protein	-	lncRNA	-	-
ENST00000436112.1	LINC01013-206	512	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000773287.1	LINC01013-323	508	No protein	-	lncRNA	-	-
ENST00000773276.1	LINC01013-312	480	No protein	-	lncRNA	-	-
ENST00000773283.1	LINC01013-319	464	No protein	-	lncRNA	-	-
ENST00000773277.1	LINC01013-313	385	No protein	-	lncRNA	-	-
ENST00000773293.1	LINC01013-329	337	No protein	-	lncRNA	-	-
ENST00000773299.1	LINC01013-335	191	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 703 bps,

Version

ENST00000653266.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000653266.2 LINC01013-213

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Transcript: ENST00000653266.2 LINC01013-213

Summary

About Us

Get help

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