Transcript: ENST00000653175.1 LINC00836-206

Description

long intergenic non-protein coding RNA 836 [Source:HGNC Symbol;Acc:HGNC:44915]

Location

Chromosome 10: 25,686,479-25,732,820 forward strand.

About this transcript

This transcript has 4 exons and maps to 66 oligo probes.

Gene

This transcript is a product of gene ENSG00000280809.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000626230.2	LINC00836-202	1640	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000655478.3	LINC00836-209	3812	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000666205.1	LINC00836-218	2565	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655854.2	LINC00836-211	2372	No protein	-	lncRNA	-	-
ENST00000654120.1	LINC00836-207	2173	No protein	-	lncRNA	-	-
ENST00000648557.1	LINC00836-205	1973	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655020.1	LINC00836-208	1871	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000671596.1	LINC00836-221	1691	No protein	-	lncRNA	-	-
ENST00000653175.1	LINC00836-206	1686	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658893.1	LINC00836-214	1679	No protein	-	lncRNA	-	-
ENST00000669089.1	LINC00836-220	1678	No protein	-	lncRNA	-	-
ENST00000656265.1	LINC00836-213	1646	No protein	-	lncRNA	-	-
ENST00000655555.1	LINC00836-210	1642	No protein	-	lncRNA	-	-
ENST00000655911.1	LINC00836-212	1554	No protein	-	lncRNA	-	-
ENST00000663043.1	LINC00836-217	1531	No protein	-	lncRNA	-	-
ENST00000662090.1	LINC00836-216	1505	No protein	-	lncRNA	-	-
ENST00000628620.1	LINC00836-203	1179	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000777095.1	LINC00836-224	1075	No protein	-	lncRNA	-	-
ENST00000777094.1	LINC00836-223	960	No protein	-	lncRNA	-	-
ENST00000668934.1	LINC00836-219	884	No protein	-	lncRNA	-	-
ENST00000659066.1	LINC00836-215	722	No protein	-	lncRNA	-	-
ENST00000777093.1	LINC00836-222	654	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000625325.2	LINC00836-201	582	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000628907.2	LINC00836-204	574	No protein	-	lncRNA	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,686 bps,

Version

ENST00000653175.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000653175.1 LINC00836-206

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Transcript: ENST00000653175.1 LINC00836-206

Summary

About Us

Get help

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