Transcript: ENST00000653044.1 LINC00882-209

Description

long intergenic non-protein coding RNA 882 [Source:HGNC Symbol;Acc:HGNC:48568]

Location

Chromosome 3: 107,111,485-107,209,762 reverse strand.

About this transcript

This transcript has 3 exons and maps to 173 oligo probes.

Gene

This transcript is a product of gene ENSG00000242759.10 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000660862.1	LINC00882-239	2058	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000671682.1	LINC00882-276	4181	No protein	-	lncRNA	-	-
ENST00000668760.1	LINC00882-262	3849	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000658897.1	LINC00882-223	2849	No protein	-	lncRNA	-	-
ENST00000484698.5	LINC00882-204	2718	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000670214.1	LINC00882-271	1960	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000662455.1	LINC00882-244	1898	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000660310.1	LINC00882-234	1708	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656342.1	LINC00882-215	1539	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000667876.1	LINC00882-259	1422	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000666382.1	LINC00882-253	1307	No protein	-	lncRNA	-	-
ENST00000665402.2	LINC00882-251	1306	No protein	-	lncRNA	-	-
ENST00000661400.1	LINC00882-240	1289	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000655832.1	LINC00882-213	1287	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000654704.1	LINC00882-210	1273	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659859.1	LINC00882-232	1268	No protein	-	lncRNA	-	-
ENST00000667805.1	LINC00882-257	1253	No protein	-	lncRNA	-	-
ENST00000665806.1	LINC00882-252	1182	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000473636.2	LINC00882-201	1178	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000657909.1	LINC00882-221	1170	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000667861.1	LINC00882-258	1165	No protein	-	lncRNA	-	-
ENST00000660636.1	LINC00882-237	1164	No protein	-	lncRNA	-	-
ENST00000663024.1	LINC00882-247	1160	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668464.1	LINC00882-261	1100	No protein	-	lncRNA	-	-
ENST00000659654.1	LINC00882-230	1095	No protein	-	lncRNA	-	-
ENST00000660757.1	LINC00882-238	1066	No protein	-	lncRNA	-	-
ENST00000658978.1	LINC00882-225	1059	No protein	-	lncRNA	-	-
ENST00000660353.1	LINC00882-235	1056	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000659605.1	LINC00882-229	1051	No protein	-	lncRNA	-	-
ENST00000652783.1	LINC00882-208	1050	No protein	-	lncRNA	-	-
ENST00000657806.1	LINC00882-220	1049	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000666687.1	LINC00882-256	1045	No protein	-	lncRNA	-	-
ENST00000669624.1	LINC00882-267	1041	No protein	-	lncRNA	-	-
ENST00000664588.1	LINC00882-250	1028	No protein	-	lncRNA	-	-
ENST00000658706.1	LINC00882-222	1028	No protein	-	lncRNA	-	-
ENST00000671604.1	LINC00882-274	1014	No protein	-	lncRNA	-	-
ENST00000656816.1	LINC00882-217	1008	No protein	-	lncRNA	-	-
ENST00000668928.1	LINC00882-263	1006	No protein	-	lncRNA	-	-
ENST00000657720.1	LINC00882-219	999	No protein	-	lncRNA	-	-
ENST00000659129.1	LINC00882-226	998	No protein	-	lncRNA	-	-
ENST00000660515.1	LINC00882-236	986	No protein	-	lncRNA	-	-
ENST00000658929.1	LINC00882-224	983	No protein	-	lncRNA	-	-
ENST00000655451.1	LINC00882-212	981	No protein	-	lncRNA	-	-
ENST00000671678.1	LINC00882-275	978	No protein	-	lncRNA	-	-
ENST00000664426.1	LINC00882-249	974	No protein	-	lncRNA	-	-
ENST00000668963.1	LINC00882-264	966	No protein	-	lncRNA	-	-
ENST00000656235.1	LINC00882-214	964	No protein	-	lncRNA	-	-
ENST00000666600.1	LINC00882-255	962	No protein	-	lncRNA	-	-
ENST00000656555.1	LINC00882-216	953	No protein	-	lncRNA	-	-
ENST00000667931.1	LINC00882-260	950	No protein	-	lncRNA	-	-
ENST00000656835.1	LINC00882-218	942	No protein	-	lncRNA	-	-
ENST00000479612.7	LINC00882-203	930	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000659809.1	LINC00882-231	928	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000666429.1	LINC00882-254	893	No protein	-	lncRNA	-	-
ENST00000669797.1	LINC00882-268	889	No protein	-	lncRNA	-	-
ENST00000653044.1	LINC00882-209	883	No protein	-	lncRNA	-	-
ENST00000664169.1	LINC00882-248	875	No protein	-	lncRNA	-	-
ENST00000671373.1	LINC00882-273	864	No protein	-	lncRNA	-	-
ENST00000660263.1	LINC00882-233	863	No protein	-	lncRNA	-	-
ENST00000662816.1	LINC00882-245	824	No protein	-	lncRNA	-	-
ENST00000669924.1	LINC00882-270	824	No protein	-	lncRNA	-	-
ENST00000669363.1	LINC00882-266	792	No protein	-	lncRNA	-	-
ENST00000662123.1	LINC00882-242	789	No protein	-	lncRNA	-	-
ENST00000659503.1	LINC00882-228	787	No protein	-	lncRNA	-	-
ENST00000477210.7	LINC00882-202	783	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000662368.1	LINC00882-243	771	No protein	-	lncRNA	-	-
ENST00000669895.1	LINC00882-269	740	No protein	-	lncRNA	-	-
ENST00000662886.1	LINC00882-246	734	No protein	-	lncRNA	-	-
ENST00000671205.1	LINC00882-272	730	No protein	-	lncRNA	-	-
ENST00000607801.6	LINC00882-207	708	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000654920.1	LINC00882-211	579	No protein	-	lncRNA	-	-
ENST00000659317.1	LINC00882-227	554	No protein	-	lncRNA	-	-
ENST00000661735.1	LINC00882-241	503	No protein	-	lncRNA	-	-
ENST00000669116.1	LINC00882-265	469	No protein	-	lncRNA	-	-
ENST00000702844.1	LINC00882-277	439	No protein	-	lncRNA	-	-
ENST00000607542.5	LINC00882-206	410	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000606742.5	LINC00882-205	381	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 883 bps,

Version

ENST00000653044.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000653044.1 LINC00882-209

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Transcript: ENST00000653044.1 LINC00882-209

Summary

About Us

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