Transcript: ENST00000652539.1 LINC00279-207

Description

long intergenic non-protein coding RNA 279 [Source:HGNC Symbol;Acc:HGNC:38724]

Gene Synonyms

NCRNA00279

Location

Chromosome Y: 8,633,081-8,650,404 forward strand.

About this transcript

This transcript has 5 exons and maps to 91 oligo probes.

Gene

This transcript is a product of gene ENSG00000286217.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000650816.1	LINC00279-203	2421	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000657784.1	LINC00279-208	5792	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000651511.1	LINC00279-204	3060	No protein	-	lncRNA	-	-
ENST00000651700.2	LINC00279-205	2542	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000651793.1	LINC00279-206	1908	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000842839.1	LINC00279-216	1096	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000842834.1	LINC00279-211	1051	No protein	-	lncRNA	-	-
ENST00000842841.1	LINC00279-218	987	No protein	-	lncRNA	-	-
ENST00000652539.1	LINC00279-207	966	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000842837.1	LINC00279-214	930	No protein	-	lncRNA	-	-
ENST00000842833.1	LINC00279-210	898	No protein	-	lncRNA	-	-
ENST00000842840.1	LINC00279-217	854	No protein	-	lncRNA	-	-
ENST00000767031.1	LINC00279-209	752	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000842838.1	LINC00279-215	726	No protein	-	lncRNA	-	-
ENST00000842835.1	LINC00279-212	711	No protein	-	lncRNA	-	-
ENST00000842836.1	LINC00279-213	705	No protein	-	lncRNA	-	-
ENST00000650791.1	LINC00279-202	624	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000842843.1	LINC00279-220	601	No protein	-	lncRNA	-	-
ENST00000842842.1	LINC00279-219	502	No protein	-	lncRNA	-	-
ENST00000413486.2	LINC00279-201	473	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000842844.1	LINC00279-221	407	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 966 bps,

Version

ENST00000652539.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000652539.1 LINC00279-207

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Transcript: ENST00000652539.1 LINC00279-207

Summary

About Us

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